Streptomyces sp. VN1: EZV63_19475
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Entry
EZV63_19475 CDS
T10674
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
strv Streptomyces sp. VN1
Brite
KEGG Orthology (KO) [BR:
strv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strv03032
]
EZV63_19475 (topA)
03400 DNA repair and recombination proteins [BR:
strv03400
]
EZV63_19475 (topA)
Enzymes [BR:
strv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EZV63_19475 (topA)
DNA replication proteins [BR:
strv03032
]
Prokaryotic type
DNA Topoisomerases
EZV63_19475 (topA)
DNA repair and recombination proteins [BR:
strv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EZV63_19475 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_2
Toprim_4
HC2
Motif
Other DBs
NCBI-ProteinID:
QIP71757
LinkDB
All DBs
Position
4317028..4319907
Genome browser
AA seq
959 aa
AA seq
DB search
MSPTSETADGGRRLVIVESPNKVKTIKGYLGPGYVVEASVGHIRDLPSGAAEVPEKYTGE
VRRLGVDVDHDFQPIYVVNADKKSQVKKLKDLLKESDELYLATDEDREGEAIAWHLQEVL
KPKIPVKRMVFHEITKDAIRAAVANPRELNQKLVDAQETRRIVDRLYGYEVSPVLWKKVM
PRLSAGRVQSVASRLVVERERARMAFRSAEYWDLTGTFATGRAGDASDPSSLVARLQTVD
GRRIAQGRDFDSLGRLKSADTLHLDEANARALAAALEDTRFSVRSVESKPYRRSPYAPFR
TTSLQQEASRKLGLGAKATMQVAQKLYENGYITYMRTDSTTLSDTALTAARAQVTQLYGT
DYLPPQPRTYAGKVRNAQEAHEAIRPSGDRFRTPAETGLTGEQFKLYELIWKRTVASQMK
DATGNSVTVKIGGTSADGRDVEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQV
AEGDALTAEEIAVDGHATKPPARYTEASLIKELEDREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDAIARGEAQSVPWLRRFYFGEGD
EPGPAPGNGGAADAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGNDIVLRVGRYGPYV
ERGEKDSDNHQRADVPEDLAPDELSVELAEELLAKPSGDFELGTDPATGHTIVAKDGRYG
PYVTEVLPEGTPKTGKNAVKPRTASLFKSMSLDTVTLDDALRLMSLPRVVGADAEGVEIT
AQNGRYGPYLKKGTDSRSLQTEEQLFGITLEEALAIYAQPKQRGRAAAKPPLKELGTDPV
SEKPVVVKDGRFGPYVTDGETNATLRSGDSVEEITPERGYELLAEKRAKGPAKKTAKKTA
KKASAKKTAAKKAPAKKTAATKKTAAAKTTTAAKKTAAKSTAKKTTAGTAAKKATASED
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcagacggcggccgccgactcgtcatcgtcgagtcgcct
aacaaggtgaagacgatcaagggctatctcggtcctggctacgtggtcgaggcgagtgtc
gggcacattcgcgacctgcccagcggcgcggcggaggtaccggagaagtacaccggggag
gtccgccgcctcggcgtggacgtcgaccacgacttccagccgatctacgtggtcaacgcc
gacaagaagtcccaggtcaagaagctcaaggacctgctgaaggaatccgacgagctctac
ctcgccactgacgaggaccgcgagggcgaggccatcgcctggcacctgcaggaagtcctc
aagccgaagatcccggtcaagcgcatggtgttccacgagatcaccaaggacgccatccgc
gccgccgtcgccaacccgcgcgagctcaaccagaagctcgtcgacgcccaggagacgcgc
cgcatcgtcgaccgcctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccgcgcctgtcggccggccgtgtccagtccgtcgcctcccgcctcgtcgtcgagcgggag
cgcgcccgcatggcgttccgctccgccgagtactgggacctcaccggcaccttcgcgacc
ggccgcgcgggggacgcctccgacccgtcgtcgctggtcgcccgcctccagacggtcgac
ggacggcgcatcgcgcagggccgcgacttcgactcactgggccggctcaagagcgcggac
acactccacctcgacgaggcgaacgcccgcgcgctcgccgccgccctcgaggacacgcgg
ttctcggtgcggtcggtcgagtccaagccgtaccgccgctccccgtacgccccgttccgt
acgacgtcgctgcagcaggaggccagccgcaagctcggcctcggcgcgaaggcgaccatg
caggtggcccagaagctgtacgagaacggctacatcacctacatgcgtacggactccacg
accctcagcgacaccgcgctcaccgcggcccgcgcccaggtcacgcagctgtacggcacg
gactacctgccgccgcagccgcgcacgtacgccggcaaggtcaggaacgcgcaggaggcg
cacgaggcgatccgcccctcgggcgaccgcttccgcacgcccgccgagaccggtctgacc
ggcgagcagttcaagctgtacgagctgatctggaagcggaccgtcgcctcccagatgaag
gacgccaccgggaacagcgtcacggtcaagatcggcggcacctccgccgacggccgggac
gtcgagttcagcgcgtccggcaagaccatcaccttccacggcttcctcaaggcctacgtc
gagggcgccgacgacccgaacgccgagctggacgaccgcgagcgccgcctgccgcaggtc
gccgagggcgacgcgctgacggccgaggagatcgcggtcgacggccacgccaccaagccc
ccggcccgctacaccgaggcgtcgctgatcaaggagctggaagaccgcgagatcggccgc
ccgtcgacgtacgcgtcgatcatcggcaccatcctggaccgcggctacgtcttcaagaag
ggcacggcgctcgtcccgtccttcctctccttcgccgtcgtcaacctcctggagaagcac
ttcgggcggctcgtcgactacgacttcaccgcgaagatggaggacgacctcgacgcgatc
gcccgcggcgaggcccagtcggtgccgtggctgcggcgcttctacttcggcgagggcgac
gaaccgggccccgccccgggcaacggcggcgcggccgacgcgggcaacggcgacggggac
cacctcggcggcctcaaggaactggtgaccgacctcggcgcgatcgacgcccgagaggtg
tcctccttccccgtcggcaacgacatcgtgctgcgcgtcggccgctacggcccgtacgtc
gagcgcggggagaaggactccgacaaccaccagcgcgccgacgtccccgaggacctggcg
ccggacgagctgtccgtggagctggcggaggaactgctcgccaagccgagcggcgacttc
gaactgggcaccgacccggccaccgggcacaccatcgtcgccaaggacgggcgttacggc
ccgtacgtcaccgaggtgctccccgagggcaccccgaagaccggcaagaacgccgtgaag
ccgcgtaccgcgtcgctgttcaagtcgatgtcgctggacacggtgaccctggacgacgcc
ctgcggctgatgtcgctgccgcgggtcgtcggcgccgacgcggagggcgtcgagatcacc
gcgcagaacggccgctacggcccgtacctgaagaagggcacggactcgcggtccctgcag
accgaggagcagctcttcgggatcacgctggaggaggcgctggcgatctacgcccagccc
aagcagcgtggccgggccgcggccaagccgccgctgaaggagctgggcaccgacccggtc
agcgagaagcccgtcgtggtcaaggacggccgcttcggtccgtacgtcaccgacggcgag
accaacgcgaccctgcgctccggcgacagcgtcgaggagatcacgcccgagcgcggctac
gagctgctcgccgagaagcgcgccaaggggcccgccaagaagacggcgaagaagaccgcc
aagaaggcgagcgcgaagaagacggccgccaagaaggcaccggccaagaagacggcggcg
accaagaagacggccgcggcgaagacgacgacggccgccaagaagaccgccgcgaagagc
acggccaagaagacgaccgccggaacggccgccaagaaggcgaccgcgtcggaggactga
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