Streptomyces sp. VN1: EZV63_20395
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Entry
EZV63_20395 CDS
T10674
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
strv Streptomyces sp. VN1
Brite
KEGG Orthology (KO) [BR:
strv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strv03016
]
EZV63_20395
Enzymes [BR:
strv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EZV63_20395
Transfer RNA biogenesis [BR:
strv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EZV63_20395
Prokaryotic type
tRNA splicing ligases
EZV63_20395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIP71910
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Position
4507114..4508307
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPAGVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDSPLEPG
RFHGLATSGWDDFWGRFDGVAEAVKFRHERAGKQMGTLGSGNHFVEVCTDTTGSVWLMLH
SGSRNIGKELAEHHIGVARGLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TLMMALLKDVVRREFKKARPVFEPEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNADSFNSASHGAGRRMSRNAAKRRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIDQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggtgcgaaggtgccgatccggatgtggaccgacccggcg
ggggtagaagaaggcgcgctgcagcagctgcgcaacgtcgcgaccctgccgtggatcaag
ggcctggcggtcatgccggacgtccactacggcaagggcgcgaccgtcggctccgtgatc
gcgatgcggggtgcggtgtgcccggcggcggtgggcgtcgacatcggctgcgggatgtcg
gcggtgaagacgtccctgacggcgaacgacctgccgggcgacctgtcgcggctgcgttcg
aagatcgagcaggcgattccggtggggcggggcatgcacgacagcccgctggagccgggg
cgcttccacggactggcgacgagcgggtgggacgacttctgggggcgcttcgacggggtg
gcggaggcggtcaagttccgtcatgagcgggccggaaagcagatgggaacgctcggaagc
ggcaaccactttgtcgaggtgtgcacggatacgaccggttctgtgtggctgatgctgcac
tccggttcccgcaacatcggcaaggagctggccgagcaccacatcggcgtcgcccggggg
ctgccgcacaaccagggcctggtcgaccgcgacctcgcggtgttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
accctgatgatggcgctcctcaaggacgtggtccgccgggagttcaagaaggcccggccg
gtcttcgagccggagatctcctgccaccacaactacgtggccgaggagcggtacgagggg
atggacctgctcgtgacccgcaagggcgcgatccgcgcggggtccggggactacgggatc
atccccggttccatgggcacgggttcgtacatcgtcaagggcctcggcaacgccgactcc
ttcaactccgcctcccacggcgccggccggcgcatgagccggaacgccgcgaagcgccgc
ttctccaccagggacctggaggagcagacgcggggcgtggagtgccgcaaggactcgggc
gtcgtggacgagatcccgggcgcctacaagccgatcgaccaggtcatcgaccagcagcgc
gacctggtcgaggtcgtggccaagctgaagcaggtcgtctgcgtgaagggctga
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