Streptomyces sp. VN1: EZV63_27095
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Entry
EZV63_27095 CDS
T10674
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
strv Streptomyces sp. VN1
Pathway
strv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EZV63_27095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strv03019
]
EZV63_27095
03400 DNA repair and recombination proteins [BR:
strv03400
]
EZV63_27095
Enzymes [BR:
strv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EZV63_27095
Messenger RNA biogenesis [BR:
strv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EZV63_27095
DNA repair and recombination proteins [BR:
strv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EZV63_27095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
AAA_22
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QIP73058
LinkDB
All DBs
Position
5975860..5978019
Genome browser
AA seq
719 aa
AA seq
DB search
MDHPELRTEADAVLAELVGDPGGSARLREDQWQAVAALVDERRRALVVQRTGWGKSAVYF
VATALLRRRGAGPTVIISPLLALMRNQVESAARAGIRARTINSANPEEWETIYGEVERGE
TDVLLVSPERLNSVDFRDQVLPRLAATTGLLVVDEAHCISDWGHDFRPDYRRLRTMLAEL
PAGVPVLATTATANARVTADVAEQLGTGSGDALVLRGPLDRESLRLGVLRLPDAAHRLAW
LGERLGELPGSGIIYTLTVAAAEEVAAFLRQCGYPVASYTGKTENADRLQAEEDLLANRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVDHADVLLLPGREDEAI
WAYFASVGFPPEEQVRRTLAVLEEAGRPLSLPALEPLVDLRRSRLETMLKVLDVDGAVQR
VKGGWTATGQPWTYDAERYAWVARQREAEQQAMRDYVATTGCRMEFLQRQLDDEKAVPCG
RCDTCVGPWLDPAVSPEALAAATGELDRPGVEVEPRKMWPTGLAAVGMDLKGRIPAGQQA
TTGRALGRLSDIGWGNRLRPILAEQAADGPVPDDVLAAVVTVLADWARSPGGWAGGSPDA
VARPVGVVAMPSRTRPRLVTSLAEGVARVGRLPLLGSLAYTPDADEYAAHRSNSAQRLRA
LAASFTVPGELETALAENPGPVLLVDDRTDSGWTLAVGARLLRQSGAGPVLPLVLALAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggaccatccggaactgcgcaccgaagccgacgccgtcctcgccgagctcgtcggtgac
cccggcgggtcggcgcggctgcgggaggaccagtggcaggcggtggccgcactcgtcgac
gagcgtcggcgggctctggtggtgcagcgaaccggctggggcaagtcggcggtgtacttc
gtcgccaccgcgctgctgcgccgacgcggcgccggccccacggtgatcatctcgccgctg
ctggcgctgatgcgcaaccaggtcgaatcggcggcacgcgcggggatccgggcgcgcacg
atcaattcggccaacccggaggagtgggagacgatctacggagaggtggagcgcggcgag
accgacgtcctcctcgtcagcccggagcgcctgaactccgtcgacttccgtgaccaggta
ctgcccaggctcgcggccacgacgggcctcctcgtggtggacgaggcacactgcatctcc
gactgggggcacgatttccgccccgactaccgaaggctgcgcaccatgctggccgagttg
ccggccggagtgccggtgcttgccacgacggcgaccgcgaacgcgcgcgtgaccgcggac
gtcgcggagcagctgggtacgggcagtggggatgctctcgtgctgcgcggaccgctcgac
cgggagagcctccggctcggggtgctgcggctgccggacgcggcgcaccggctggcgtgg
ctgggggagcggctgggggagctgccgggatcagggatcatctacacgctgacggtggcg
gcggcggaggaggtcgcggcgttcctgcggcagtgcgggtacccggtggcctcctacacg
gggaagacggagaacgccgaccggctgcaggccgaggaggatctgctggcgaaccgggtg
aaggcactggtggcgacctccgcgctgggcatgggcttcgacaagcccgacctcgggttc
gtcgtgcacctgggctcgccctcgtcccccatcgcctattaccagcaggtggggcgcgcg
gggcgcggggtggaccacgcggacgtgctgctgctcccggggcgggaggacgaggcgatc
tgggcgtatttcgcttccgtgggcttcccgcccgaggagcaggtacggcggacgctggcg
gtactggaggaggcggggcgcccactgtcgctgccggccctggagccgctggtggacctc
cggcgttcgcggctggagacgatgctcaaggtgctggacgtggacggcgccgtccagcgt
gtgaagggcggctggacggcgacgggacagccgtggacctacgacgcggagcggtatgcg
tgggtggcccggcagcgcgaggccgagcagcaggccatgcgggactacgtggcgaccacg
gggtgccggatggagttcctgcagcggcagctggacgacgagaaggcggtcccgtgcggt
cgctgcgacacctgcgtcggcccctggctcgatccggccgtctctcccgaggccctcgcg
gcggcgacgggcgagctggaccgcccgggcgtcgaggtcgagccccgcaagatgtggccg
accgggctcgccgcggtcggcatggacctgaagggccgtatccccgccggccagcaggcg
accacgggacgtgcgctgggcaggctctcggacatcggctggggcaaccggctgcggccg
atcctggcggagcaggcggccgacggccccgtcccggacgacgtgctggccgccgtggtg
acggtgctggccgactgggcccgctcgccgggagggtgggccggcggttctccggacgcc
gtggcgaggcctgtgggcgtcgtggcgatgccctcccgcacccgcccccggttggtcacg
tccctggccgagggcgtggcccgggtcggcaggctcccgctgctgggcagcctggcctac
acgcctgacgccgacgaatacgccgcccaccggagcaactccgcccagcggctgcgggct
ctggccgcctccttcacggtgccgggcgaactcgagaccgccctggccgagaaccccggc
ccggtgctgctcgtcgacgaccgcaccgactccggctggaccctggccgtcggggcgcgc
ctcctgcgccagtccggagccggcccggttctcccactcgtcctcgcgctggccggatag
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