Streptomyces sp. S8: A6E92_18285
Help
Entry
A6E92_18285 CDS
T11600
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
strx Streptomyces sp. S8
Brite
KEGG Orthology (KO) [BR:
strx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strx03016
]
A6E92_18285
Enzymes [BR:
strx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A6E92_18285
Transfer RNA biogenesis [BR:
strx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A6E92_18285
Prokaryotic type
tRNA splicing ligases
A6E92_18285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ARI53912
LinkDB
All DBs
Position
4371717..4372910
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWTDPASVEDVAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDETVDPG
RLHGFPTAGWDDFWGRFDGIAEAVKFRQERATKQMGTLGSGNHMIEFCLDSDGSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQGIIDRDLAVFISDTPQMADYRNDLYWAQEYAKYNR
AIMMALFKDVVRREFKKAKPVFEQEISCHHNYVAEERYDGADLLVTRKGAIRAGSGEYGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTVRDLEEQTRGVECRKDSG
VLDEIPAAYKPIEQVMEQQRDLVEVVAKLKQVICIKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggtgccgggggcgaaggtccccatccggatgtggaccgatccggcg
tccgtcgaggacgtggcgatgcagcagttgaggaacgtctccacgcttccgtggatcaag
ggtctcgccgtcatgccggacgtccacttcggcaagggggccacggtcggttcggtgatc
gcgatgcagggcgcggtctgcccggccgcggtcggggtcgacatcggctgcgggatgtcc
gcggtcaggacgtccctgacggcgaacgatcttcccggcgacctgtcacggctgcgctcc
aagatcgagcaggccattccggtgggccgcgggatgcacgacgagaccgtggatccggga
cggctgcacgggttcccgacggcggggtgggacgacttctgggggcggttcgacgggatc
gcggaagcggtcaagttccgtcaggaacgtgccacgaagcagatgggaacgctcggatcg
ggcaatcacatgatcgagttctgtctcgacagtgacgggagcgtgtggctgatgctgcac
tccggttcccggaacatcggcaaggaactggccgagcaccacatcgggatcgcgcagaag
ctgccgcacaaccagggcatcatcgaccgggacctggcggtgttcatctcggacactccg
cagatggccgactaccggaacgatctgtactgggctcaggagtacgccaagtacaaccgc
gcgatcatgatggcgctcttcaaggacgtggtccgcagggagttcaagaaggcgaagccg
gtcttcgagcaggagatctcctgccaccacaactacgtggcggaggagcggtacgacggc
gccgacctgctggtcacccgcaagggagcgatccgcgcgggctccggtgagtacggcatc
atccccggctcgatgggcaccagctcgtacatcgtcaagggtctcggcaacgagaaggcg
ttcaactcggcctcccacggagccggtcgccggatgagccggaacgcggccaagcgccgc
ttcaccgtgcgggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggc
gtcctggacgagatcccggccgcgtacaagccgatcgagcaggtcatggagcagcagcgc
gacctggtcgaggtggtcgcgaagctcaagcaggtcatctgcatcaaggggtga
DBGET
integrated database retrieval system
