Streptomyces sp. S6: EQG64_18385
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Entry
EQG64_18385 CDS
T07981
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
stry
Streptomyces sp. S6
Brite
KEGG Orthology (KO) [BR:
stry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stry03019
]
EQG64_18385 (hrpA)
Enzymes [BR:
stry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EQG64_18385 (hrpA)
Messenger RNA biogenesis [BR:
stry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EQG64_18385 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
AAA_16
NACHT
PhoH
SLFN-g3_helicase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QCW78614
LinkDB
All DBs
Position
complement(4180498..4184430)
Genome browser
AA seq
1310 aa
AA seq
DB search
MSTSFADLQSQLGQLSLRDANRLGRRLEGARRIRKPEARQSVLDEIAAEAGKAADRLASR
AARLPALSYPEELPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGVRGM
IGHTQPRRIAARTVAERVADELKTPLGETVGWKVRFTDQVNPESTYLKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKVVITSATIDPERFARHFGD
APIVEVSGRTYPVEVRYRPLLEEDSEDSDRDQITAICDAVDELSHEAPGDILVFLSGERE
IRDTADALNKRNLRHTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEDDFVTRPE
FTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDAAEKDP
KKRLTPLGRKLSQLPVDPRLARMVIEADRNGCAREVMVIAAALSIQDPRERPAEKQTQAD
QQHARFKDETSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
TVAKQMGITVEEPKGDESIPEQAIHTSLLSGLLSHIGLKDTEKNEYLGARSAKFAIFPGS
ALFKKQPRFVMSAELVETSRLWARVNAKVEPDWIEPLAQHLVKRTYSEPHWEKDQAAVMA
YERVTLYGVPIIAQRKVNFGRIDQEASRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEE
LEHRARRRDILVDDETLFDFYDQRIPEHIVSGAHFDSWWKHKKREEPDALDFERSMLINE
KAGAVTKDDYPDSWRQGKLKFKVTYQFEPGADADGVTVHIPLQVLNQVTAEGFDWQIPGL
REEVVTELIRSLPKPIRRHYVPAPNYAEKFLDRAVPLQEPLPVTLARELHRMVGVPVTAD
DFDLSRVPDHLKITFRIVDERRRKVAEDKDLEALRLKLRPKARQALSKAAAATAGPSGES
VERSGLTDWTIGTLNQVFETRRAGQPVKAYPALVDQGETVAVRLFDTVAEQQQAMWRGTR
RLILLNIPVNPAKFASDRLTNQQKLALSRNPHGSVQALFEDCATAAADRLIAAHGGPAWD
EKAFRTLYDKVRADLVDLTVRTVDQVQQVLAAWQACERRLKATTSPTLLANVTDVRDQLA
RLVPPGFVTATGLRRLPDLMRYLVAADRRLQQMPTAVQRDTTRMEKVHEMQDEYAWLLEQ
LPQGRPVAQEVLDVRWMIEELRVSYFAHALGTAFPVSDKRIVKAIDALAP
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgatctccagtcccagctcggacagctctcgctccgtgacgcg
aaccggctcggccggcgcctcgaaggagcgcgccgcatccgcaagcccgaggcccgccag
tccgtgctggacgagatcgcggccgaggcgggcaaggcggccgaccggctcgcgtcgcgc
gcggcccggctgccggccctgtcgtatcccgaagagctgccggtcagccagaagaaggac
gagatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgccggtgagaccgggtcc
gggaagaccacgcagctgcccaagatctgtatggagctggggcgcggggtccggggcatg
atcgggcacacccagccccgccggatcgcggcgcgcacggtcgcggagcgggtcgcggac
gagctgaagacgccgctgggcgagaccgtcggctggaaggtccgcttcaccgaccaggtg
aacccggagtcgacgtatctgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgctggcgtacgacacgatcatcatcgacgaggcccacgagcggtcg
ctgaacatcgacttcctgctcggctatctggcccggctgctgccgcgccgcccggacctg
aaggtcgtcatcacctccgcgaccatcgatccggagcggttcgcgcgccacttcggggac
gcgccgatcgtggaggtcagcgggcggacgtatccggtggaggtgcgctaccggccgctc
ctcgaagaggacagcgaggactccgaccgggaccagatcaccgcgatctgcgacgccgtc
gacgagctgagccacgaggcccccggcgacatcctggtcttcctctccggggagcgggag
atccgggacacggcggacgcgctgaacaagcgcaacctcagacacaccgaggtcctcccc
ctctacgcgcgcctctcgcacgccgagcagcaccgcgtcttccagcgccatacgggacgc
cgcatcgtcctcgcgacgaacgtggcggagacctcgctgaccgtccccggcatcaagtac
gtgatcgacccgggcaacgcccgtatctcccgctacagccaccgcaccaaggtccagcgg
ctgccgatcgagcggatctcccaggccagcgccaaccagcgcaagggccgctgcggccgt
acgtcggacggcatctgcatccggctctactcggaggacgacttcgtcacccggccggag
ttcaccgatccggagatcctgcggaccaacctggcctccgtcatcctccagatgaccgcc
gccgggctcggggacatcgagaagttcccgttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtgcagctgctccaggagctgggggcgctcgacgcggcggagaaggatccg
aagaagcggctcaccccgctcggccgcaagctctcccagcttcccgtcgacccccggctg
gcccggatggtcatcgaggccgaccgcaacggctgcgcccgcgaggtcatggtcatcgcc
gccgcgctctccatccaggacccgcgcgagcggcccgcggagaagcagacgcaggccgac
cagcagcacgcccggttcaaggacgagacctccgacttcctcgccttcctcaatctctgg
cgctatgtccgggagcagcagaaggagcgtggctcgtcctcgttccgccggatgtgcaag
caggagtatctgaacttcctgcgcatccgcgaatggcaggacatctacgcgcagctgcgg
acggtcgccaagcagatggggatcaccgtcgaggagcccaagggcgacgagtcgatcccc
gagcaggcgatccacacctcgctgctctccgggctgctgtcgcacatcgggctgaaggac
accgagaagaacgagtacctgggcgcgcgcagcgccaagttcgcgatcttccccgggtcg
gcgctcttcaagaagcagccccggttcgtgatgtcggccgagctggtggagacctcccgg
ctctgggcgcgggtcaacgccaaggtcgagcccgactggatcgagccgctggcccagcac
ctggtgaagcgcacctacagcgagccgcactgggagaaggaccaggcggcggtgatggcg
tacgagcgggtcaccctctatggggtgccgatcatcgcccagcgcaaggtcaatttcggc
cggatcgaccaggaggcctcgcgggatctgttcatccgcaacgccctggtcgagggcgac
tggcgcacccaccaccagttcttccacgacaaccgcaaactgctgggcgaggtcgaggag
ttggagcaccgcgcccggcgccgcgacatcctcgtggacgacgagacgctcttcgacttc
tacgaccagcgcattccggagcacatcgtctccggggcgcacttcgactcgtggtggaag
cacaagaagcgcgaggagccggacgccctcgacttcgagcgctccatgctgatcaacgag
aaggccggggccgtcaccaaggacgactacccggactcctggcggcaggggaagctcaag
ttcaaggtgacctaccagttcgagccgggcgcggacgcggacggtgtgaccgtccacatc
ccgctccaggtgctcaaccaggtcaccgccgagggcttcgactggcagatcccggggctg
cgcgaggaggtcgtcaccgagctgatccgctcgctgccgaagccgatccgccgccactac
gtccccgcgccgaactatgcggagaagttcctggaccgggccgtcccgctccaggagccg
ctgccggtcaccctcgcccgtgagctgcaccggatggtcggggtgccggtcactgcggac
gacttcgacctctcccgggtcccggaccacctgaagatcacgttccggatcgtcgacgag
cggcgccgcaaggtggccgaggacaaggacctggaggcgctccggctgaagctgcgcccc
aaggcgcgtcaggccctctccaaggccgccgcggcgaccgcgggcccctcgggcgagtcc
gtcgagcgctcgggcctcacggactggacgatcggcacgctgaaccaggtcttcgagacc
cggagggccgggcagccggtgaaggcgtacccggccctcgtcgaccagggcgagaccgtc
gccgtacggctcttcgacaccgtggccgagcagcagcaggcgatgtggcgcggcacccgg
cggctgatcctgctgaacatcccggtgaacccggcgaagttcgcctccgaccggctcacc
aaccagcagaagctggccctctcccgcaatccgcacggctcggtccaggccctcttcgag
gactgcgccaccgccgccgccgaccggctgatcgccgcgcacggcggcccggcgtgggac
gagaaggcgttccggacgctgtacgacaaggtccgcgccgatctggtggacctgaccgtc
cgcacggtcgaccaggtgcagcaggtgctggccgcctggcaggcctgtgagcggcggctg
aaggcgaccaccagcccgacgctgctcgccaacgtcaccgacgtccgcgaccagctggcc
cggctcgtgccgcccggcttcgtcacggccaccggtctgcgccggctgcccgacctgatg
cgctacctggtggcggccgaccgacggctccagcagatgccgacggccgtgcagcgggac
accacacggatggagaaggtccacgagatgcaggacgagtacgcctggctgctcgaacag
ctcccgcagggacggccggtggcgcaggaggtgctggacgtccgctggatgatcgaggag
ctgcgcgtcagctacttcgcgcacgcgctgggcaccgcgttccccgtctcggacaagcgg
atcgtgaaggcgatcgacgccctggcaccctga
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