Streptomyces sp. 71268: OYE22_23820
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Entry
OYE22_23820 CDS
T09829
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
strz
Streptomyces sp. 71268
Pathway
strz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OYE22_23820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strz03019
]
OYE22_23820
03009 Ribosome biogenesis [BR:
strz03009
]
OYE22_23820
Enzymes [BR:
strz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OYE22_23820
Messenger RNA biogenesis [BR:
strz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OYE22_23820
Ribosome biogenesis [BR:
strz03009
]
Prokaryotic type
rRNA processing factors
OYE22_23820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
WEV27868
LinkDB
All DBs
Position
6010392..6014756
Genome browser
AA seq
1454 aa
AA seq
DB search
MLEPIEPHESTQAQHVAESADRPGAEAPLGDSPSGTLPPRRRRRAASRPAGPPVAKTDAT
ALSGDDAAAAASTEAPTAPAAASVAAIAASGAADEPRAAADAPDAGAAGDAEAAPRGRTR
RRATRKATAPAGAPAATEAAAQPEPVAAATPVATAPVATTADAVADEAAAEESAPRARSR
RRATRKATAPAGASQRPADEAPVAEEEEEPVAEQAPAATPAQAEPAVAHAVDEPAAEESA
PRARTRRRATRKATAPAGPAQGAETPADEVAADHAAAQEPAAEVVAEPAAEAVAEPVTEA
AAEPAPRSRTRRRAVRRTATAEPQEPVADERESAPEPAPATRRTRQRAASDPVAPAASAP
EAAAEPRPAEATSSTPTQEPVRGRRRAVRPPTAVFQAPVFAEPMFQTPETAAAAAAAAGR
QDDAYEEEEPAAERATTSSRRRRRRRAVEDEPAAERAVTETRAPSGAGQPATEPADEADE
ALADGAAEPEHDAEAEDEGGDRPSRRRRRGGRRRRRGEALDAEGADEHTDGDQAEQADHA
EQAPEAEPADEEQHAEDGESGAGEDDATGGGSSSSRRRRRRRRRSGDGADATGGDDPERT
VVKIREPRERRAKDVEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARR
EAVERVMVVRQSGERTQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFV
DIGKGRNAVLYAGEVNFEALGMGHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVS
LPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGASEDELTRD
VARLQAQWEEIQQKAKGGSSHAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWETIH
GYVSHVAPDLADRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVV
DVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLR
RLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSESCVHCNGRGVLVHMDQPTS
VGGGGGGKRGKKKKGGGDQHEHVHAPAEAERPAIQPAPAEVAPAEVTEPAPVEVAAPEAE
EEWFGSAAEAQAAAELGRGSAASRRGRRRASRKASAPAGSPRQAEVSVEEPVAPAAEAPV
AEAPAPVEPAPAVVEPVVEPTPEPVAQPATPVVEAAEPAAPAAPPRARRRVTRKVTAPAG
SPADAEAAVVVVGPSGTDRAVAEAPAEPVTEPAPTEVPEPATAPAPDALVEAAEEEAATE
EAAPAAKKVAKKAPAKKATAKKATAKKATAKKAPAKKAAAKKAEPEAAVSEAAVPEAAGA
EDAATPEADEPAATKKATAKKTAAKKAPATKAAAKKAPAKRAATKKATAKKTAAKKTAAA
EQSTTSAVSATTED
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccaattgagccccacgaatccacacaggcccagcacgtggccgaatcggcg
gaccggccaggcgccgaggcaccgctgggggacagccccagcggcaccctgccgccgcgc
cgccggcgccgcgccgcctcccggcccgccgggcccccggtcgcgaagaccgacgccacc
gcgctgagcggtgacgacgcggcagcggcggcctccacggaggcgccgaccgccccggcc
gccgcctccgtagccgccatcgcggcctccggcgcggcggacgagccgcgcgccgccgct
gacgcccccgacgccggtgcggccggcgacgcggaggccgccccgcgcggccgtacccgc
cgtcgcgccacccgtaaggccaccgccccggccggcgcacccgccgccaccgaggccgcc
gcccagcccgagccggtcgccgccgccacccccgtcgcgaccgcccccgtcgcgaccacc
gccgacgccgtcgctgacgaggccgccgccgaggagtccgctccgcgcgcccgcagccgt
cgccgcgccacccgtaaggccaccgccccggccggcgcctcgcagcgccccgccgacgag
gcgcccgtggccgaggaagaggaggagccggtggccgagcaggccccggccgccaccccc
gcgcaggccgagcccgccgtcgcgcacgccgttgacgagcccgccgccgaggagtccgct
ccgcgcgcccgtacccgtcgccgcgccacccgtaaggccaccgctccggccggccccgcg
cagggcgccgagacgcccgccgacgaggtggccgccgaccacgccgccgcccaggagccg
gccgccgaggtcgtcgccgagcccgccgccgaagccgtggccgagcccgtcaccgaagcc
gcagccgagccggcgccgaggtcgcgcacccggcgccgtgccgtgcgcaggacggccacc
gccgaaccgcaggagccggtcgccgacgagcgggagagcgcgccggagcccgcgcccgcg
acgcggcgtacccgccagcgggccgccagcgacccggtcgcgcccgccgcgagcgccccg
gaggccgccgccgagccccggcccgccgaggccaccagcagtactccgacccaggagccg
gtgcggggccggcggcgcgccgtgcgcccgccgaccgccgtcttccaggcgccggtgttc
gccgagccgatgttccagaccccggagaccgcggcggccgccgccgcggcggccggacgg
caggacgacgcgtacgaggaagaggagcccgccgcggagcgggccaccaccagcagccgg
cgccgccgccggcgccgggccgtcgaggacgagccggccgccgagcgcgccgtgaccgag
accagggccccgagcggggccggtcagcccgcgaccgagccggccgacgaggcggacgag
gcgctcgccgacggcgccgccgagccggagcacgacgcggaggccgaggacgagggcggc
gaccgcccctcgcgccgccgccgccgcggtggccgtcgccgtcgccggggcgaggcgctc
gacgccgagggcgccgacgagcacaccgacggtgaccaggccgagcaggccgaccacgcg
gagcaggcccccgaggccgagcccgccgacgaggagcagcacgccgaggacggcgagagc
ggtgcgggcgaggacgacgcgacgggcggcggctccagcagcagccggcgccgtcggcgt
cggcgccggcgcagcggcgacggcgcggacgccaccggtggggacgacccggagcgtacg
gtcgtcaagatccgtgagccgcgcgagcgacgcgccaaggacgtcgagccctccgacgag
gtgcagtccatcaagggctccacgcgccttgaggccaagaagcagcgccgccgcgagggg
cgcgagcagggccggcgccgggtgccgatcatcaccgaggcggagttcctggcgcgccgc
gaggccgtcgagcgcgtgatggtcgtccggcagagcggtgagcgcacccagatcggcgtg
ctggaggacaacgtcctcgtcgagcacttcgtgaacaaggagcaggccaccagctacgtc
ggcaacgtgtacctgggcaaggtgcagaacgtgctgccgtccatggaggccgcgttcgtc
gacatcggcaagggccgcaacgcggtcctgtacgccggcgaggtcaacttcgaggcgctc
ggcatgggccacggcccgcgtcgcatcgagaccgcgctcaagtccggccagtccgtcctg
gtccaggtcaccaaggacccgatcggccacaagggcgcccggctgaccagccaggtctcg
cttcccggccgctacctggtgtacgtgcccgagggctcgatgaccggcatcagccgcaag
ctcccggacaccgagcgggcgcggctgaagcagatcctcaagaagatcgtccccgaggac
gccggcgtcatcgtgcgcacagcggccgagggcgccagcgaggacgagctgacccgggac
gtcgcccgcctgcaggcgcagtgggaggagatccagcagaaggcgaagggcggcagctcg
cacgccccgacgctgctgtacggcgagccggacatgaccgtccgcgtcgtgcgcgacatc
ttcaacgaggacttctccaaggtcatcgtcagcggtgacggcgcgtgggagaccatccac
gggtacgtctcgcacgtcgcgcccgacctcgccgaccggctccagaagtggacgtcggac
gtggacgtgttcgccacgtaccggatcgacgagcagctcatgaaggcgctcgaccgcaag
gtctggctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtcgtggtc
gacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtcaccagg
aacaacctggaggcggccgaggagatcgtgcgccagctccggctgcgcgacctcggcggc
atcatcgtgatcgacttcatcgacatggtcctggagtccaaccgggatctcgtgctgcgt
cgcctcctggagtgcctgggccgcgaccgtacgaagcaccaggtggccgaggtgacctcg
ctgggcctggtgcagatgacccgcaagcgcgtcgggcaggggctcctggagtccttctcc
gagtcgtgcgtgcactgcaacgggcgtggcgtcctggtccacatggaccagccgacctcc
gtcggtggcgggggcggcggcaagcgcggcaagaagaagaagggcggcggcgaccagcac
gagcacgtgcacgcgccggccgaggccgagcgcccggcgatccagcccgcgccggccgag
gtcgccccggcagaggtgaccgagcccgcgccggtcgaggtcgccgccccggaggcggag
gaggagtggttcggcagcgccgccgaggcgcaggccgccgccgagctgggacgcggttcg
gccgcctcgcgacgcggtcgccggcgcgccagccgcaaggcgtcggcccctgcaggctcg
ccccggcaggccgaggtgagcgtggaggagccggtcgctcccgccgccgaggcccccgtc
gccgaggccccggccccggtggagccggccccggccgtcgtcgagccggtcgtcgagccg
acccctgagccggtcgcgcagccggccaccccggtggtggaggccgccgagccggccgct
cccgccgcgccgccgcgcgctcgccgtcgggtgacgcgcaaggtcaccgcgccggccggg
tcgccggccgacgcggaggcggccgtggtcgtggtcggcccgtccggcacggaccgcgcc
gtcgccgaggccccggccgagcccgtgacggagccggcgcccaccgaggtgccggagccg
gccacggcccccgcccccgacgcgctggtcgaggcggcggaggaggaggccgcgacggag
gaggcggccccggcggcgaagaaggtcgcgaagaaggcgccggccaagaaggccaccgcg
aagaaggccaccgcgaagaaggcgaccgccaagaaggccccggccaagaaggcggcggcc
aagaaggcggagcccgaggcggcggtgtccgaggcagcggtgcccgaggcggcaggtgcc
gaggacgcggcgaccccggaggcggacgagccggcggcgaccaagaaggccaccgcgaag
aagacggccgccaagaaggccccggccaccaaggcggccgccaagaaggccccggccaag
agggcggcgaccaagaaggccaccgccaagaagacggccgccaagaagaccgccgccgcg
gagcagtcgaccacgtcggccgtgtcggccaccacggaggactga
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