Streptomyces sp. S1D4-11: HEP87_08585
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Entry
HEP87_08585 CDS
T10399
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stsd Streptomyces sp. S1D4-11
Pathway
stsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEP87_08585 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stsd03021
]
HEP87_08585 (rho)
03019 Messenger RNA biogenesis [BR:
stsd03019
]
HEP87_08585 (rho)
Transcription machinery [BR:
stsd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HEP87_08585 (rho)
Messenger RNA biogenesis [BR:
stsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HEP87_08585 (rho)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
Spore_III_AA
AAA_22
NACHT
AAA_16
AAA
Motif
Other DBs
NCBI-ProteinID:
QIY94090
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All DBs
Position
1805235..1806377
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AA seq
380 aa
AA seq
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MTTTLEHPPVQKQLPAHATGVLDITHNGQGYLRAADSCLPTPTDVQVSAALIRRHGLRKG
DTVEGVRGGPRALAEVERINGRTPEELRRRPHFGDLTPLHPRDRLRLEHPASGMAGRVVD
LVSPVGKGQRGLIVAPPKTGKTVLLQQLAAAVAGNHPECHLIVLLLDERPEEVTDMRRSV
RGEVYASTFDKTPKQHIALAELVVERAKRLVEQGEDVVILMDSLTRLCRAHNNAAASGGR
TLSGGVDAAAVHGPKRFFGAARLAEEGGSLTILATALVETGSRADDYFFEELKSTGNMEL
RLDRTLASRRVFPAVDIIPSGTRREELLLPGAELTAVRGLRRALQTRDAQAALETLLERL
RATPNNATFLRQVQPTLPTA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacaccctcccgtacagaagcagctcccggcccacgccaccggt
gtcctcgacatcacgcacaacgggcaggggtacctgcgcgccgccgacagctgcctgccc
acgccgaccgacgtccaggtgtccgccgcactgatccgccgtcacggcctgcgcaagggc
gacaccgtcgaaggcgtacgcggcggaccccgcgccctcgccgaggtcgagcggatcaac
ggccgcacccccgaagagctgcggcgccgcccgcacttcggcgacctcaccccgctgcac
ccacgcgaccggctccgcctggagcaccctgcgagcggcatggccggacgcgtcgtcgat
ctggtctcccccgtcggaaagggccagcgcggcctgatcgtcgccccgcccaagaccggc
aagacggtactgctccagcagctcgccgccgccgtcgcgggcaaccaccccgaatgccat
ctgatcgtgctgctcctcgacgagcggcccgaagaggtcaccgacatgcggcgctccgtc
cgcggcgaggtctacgcctcgaccttcgacaagacgccgaagcagcacatcgccctggcc
gagctcgtcgtcgagcgcgccaagcggctcgtcgaacagggcgaggacgtcgtcatcctg
atggactcgctcacccggctgtgccgcgcgcacaacaacgcggccgcctccggtggccgc
accctcagcggcggcgtcgacgccgccgcggtgcacggtcccaagcggttcttcggcgcc
gcgcgcctcgccgaggagggcggctcgctcaccatcctcgccaccgccctggtggagacc
ggctcccgcgccgacgactacttcttcgaggagctcaagagcaccggcaacatggagctc
cgcctcgaccggaccctcgcctcacggcgtgtgttcccggccgtggacatcatcccttcc
ggcacccgccgcgaggaactgctcctgcccggggccgagttgacagccgtacgcggcctg
cgacgcgccctgcagacccgggacgcccaggccgcactggaaaccctgctggagcggctg
cgcgccacgccgaacaacgcgaccttcctgcgtcaggtccagccgaccctgcccaccgcc
tga
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