Streptomyces sp. S1D4-11: HEP87_13520
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Entry
HEP87_13520 CDS
T10399
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
stsd Streptomyces sp. S1D4-11
Brite
KEGG Orthology (KO) [BR:
stsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stsd03019
]
HEP87_13520
Enzymes [BR:
stsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HEP87_13520
Messenger RNA biogenesis [BR:
stsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HEP87_13520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
nSTAND3
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QIY94854
LinkDB
All DBs
Position
complement(2886631..2889492)
Genome browser
AA seq
953 aa
AA seq
DB search
MIVMLSVAAGSLESTMTEDLSPAERYAAARKRAVEQATALASFREMYDFGLDPYQIEACQ
ALEAGKGVLVAAPTGSGKTVVGEFAVHLALQQGKKCFYTTPIKALSNQKYSDLCRRYGAD
KVGLLTGDNSVNSDAPVVVMTTEVLRNMLYAGSQTLLGLGYVVMDEVHYLSDRFRGAVWE
EVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGHTEVIVSEHRPVPLFQHVLAGRRMYD
LFEEGEGNKKAVNPDLTRLARMEASRPSFQDRRRGRAMREADRERERRQRSRIWTPGRPE
VIERLDAEGLLPAITFIFSRAACEAAVQQCLYAGLRLNDEEARAKVREIVEERTASIPSE
DLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPAR
SVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGFSPDHLAGLAGT
RTYPLRSSFKPSYNMAVNLVEQFGRHRSRELLETSFAQFQADKSVVGISRQVQRNEEGLE
GYKESMTCHLGDFDEYARLRRELKDRETELAKQGAAQRRAEAAVALERLKPGDIIHVPTG
KFAGLALVLDPGLPAGRSNGHRGFEHHDGPRPLVLTAERQVKRLASMDFPVPVEALERMR
IPKSFNPRSPQSRRDLASALRTKAGHIVPDRLRKRRSEAADDREIARLRTAIRAHPCHGC
NDREDHARWAERYHRLLRDTKQLENRIEGRTNTIARTFDRIVALLTELDYLRGDEATEHG
RRLARLYGELDLLASECLRAGVWEGLDPAELAACVSALVYESRVGDDAMAPKLPSGKAKA
ALGEMVRIWGRLDALEEDFRITQSEGVGQREPDLGFAWAAYEWASGKGLDEVLREAEMPA
GDFVRWCKQVIDVLGQISAAAPVAGGERSTVAKNARKAVDGLLRGVVAYSSVG
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgtcatgttgtcagtggctgccggtagtctcgaaagcacgatgacagaggacctc
tcaccggccgagcggtatgcggcagcacggaagcgcgctgtcgagcaggccaccgcgctc
gcctccttccgcgagatgtacgacttcggcctcgacccctaccagatcgaggcctgccag
gcgctcgaagcgggcaagggtgtgctcgtggccgcgcccaccggctcgggcaagacggtc
gtcggcgagttcgccgtccacctcgccctccagcagggcaagaagtgcttctacaccacg
ccgatcaaggcgctctcgaaccagaagtactccgatctgtgccgccgctacggcgcggac
aaggtcggcctgctcaccggcgacaacagcgtcaactccgatgccccggtggtcgtcatg
accaccgaggtgctgcgcaacatgctgtacgcgggctcccagacccttctcggcctcggc
tatgtggtcatggacgaggtgcactacctctccgaccgcttccgtggtgccgtctgggag
gaagtgatcatccacctcccggagtcggtgaccctggtgtcactctcggcgaccgtgtcg
aacgcggaggagttcggcgactggctggacaccgtgcgcggccacaccgaagtgatcgtc
tccgagcaccggcccgtcccgctgttccagcacgtgctggccgggcgccggatgtacgac
ctcttcgaggagggcgagggcaacaagaaggcggtcaaccccgacctcacccgcctggcc
cgtatggaggccagccgtccctcgttccaggaccgcagacgcggccgcgccatgcgcgag
gccgaccgcgagcgcgagcgccggcagcgctcgcggatctggacaccgggccgccccgag
gtcatcgaacggctcgacgccgagggcctgctgcccgcgatcacgttcatcttcagccgc
gccgcctgcgaggccgccgtccagcagtgcctgtacgcgggcctcaggctgaacgacgag
gaggcgcgcgcgaaggtccgcgagatcgtcgaggagcgcaccgcgtccatcccctccgag
gatctgcacgtcctgggttactacgagtggctggagggcctggagcgcggcatcgcggcc
caccacgcgggcatgctgcccacgttcaaggaagtcgtcgaggaactcttcgtacgcggc
ctggtgaaggccgtgttcgcgaccgagaccctggcgctgggcatcaacatgcccgcccgc
tccgtggtgttggagaagctcgtcaagtggaacggcgagcagcacgccgacatcacaccc
ggcgagtacacccagctcaccggtcgtgccgggcgccgcggcatcgatgtcgagggccac
gccgtcgtgctgtggcagcgcggcttcagccccgaccacctggcgggactcgcgggcacc
cgcacctacccgctgcgctccagcttcaagccgtcgtacaacatggccgtgaacctggtc
gagcagttcggccggcaccgctcgcgcgaactccttgagacgtccttcgcgcagttccag
gccgacaagtcggtcgtcgggatctcccggcaggtgcagcgcaacgaggaggggctggag
ggctacaaggagtccatgacctgccacctcggggacttcgacgagtacgcgcgactgcgc
cgcgaactcaaggaccgcgagacggagctcgccaagcagggcgcggcacagcggcgcgcc
gaggcggccgtggcgctggagaggctcaagcccggtgacatcatccatgtcccgaccggc
aagttcgccggcctggcgctggtcctcgacccggggctgcccgcgggccggtccaacggc
caccgcggcttcgagcaccacgacggaccacgcccgctggtcctcaccgccgagcgccag
gtgaagcggctggcctcgatggacttcccggtgccggtcgaggcgctggagcggatgcgc
atcccgaagtccttcaacccgcgctccccgcagtcccgtcgcgatctcgcctccgcgctg
cgcaccaaggccgggcacatcgtccccgaccggctgcgcaagcgccgctccgaggccgcc
gacgaccgtgagatcgcccggctgcgcaccgcgatccgcgcccacccctgccacgggtgc
aacgaccgtgaggatcacgcccgttgggccgagcgctaccaccggctgctgcgcgacacc
aagcagctggagaaccgcatcgagggccggacgaacaccatcgcccgcaccttcgaccgg
atcgtcgccctcctcaccgagctggactacctgcgcggcgacgaggccacggagcacggc
agacggctcgcccggctgtacggcgaactcgacctgctggccagcgaatgcctgcgcgcc
ggggtctgggaaggcctcgacccggccgaactcgcggcctgtgtctcggcgttggtgtac
gagtcgcgggtcggcgacgacgcgatggcgccgaagctgccgtccggcaaggccaaggcg
gcgctcggtgagatggtccgcatctggggccgtctcgacgcgctggaggaggacttccgg
atcacccagtccgagggcgtcggccagcgcgaaccggacctcggcttcgcctgggcggcc
tacgagtgggcttcaggcaagggcctcgacgaggtgctgcgcgaggcggagatgccggcc
ggtgacttcgtccgctggtgcaagcaggtcatcgacgtgctgggccagatctcggccgcc
gcgccggtcgccggcggtgagaggtcgacggtcgcgaagaacgcgcgcaaggcggtcgac
ggcctgctgcgcggagtggtcgcctactcgtcggtgggctga
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