Streptomyces sp. S1D4-11: HEP87_30550
Help
Entry
HEP87_30550 CDS
T10399
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stsd Streptomyces sp. S1D4-11
Brite
KEGG Orthology (KO) [BR:
stsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stsd03016
]
HEP87_30550
Enzymes [BR:
stsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HEP87_30550
Transfer RNA biogenesis [BR:
stsd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HEP87_30550
Prokaryotic type
tRNA splicing ligases
HEP87_30550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIZ01844
LinkDB
All DBs
Position
6668413..6669606
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEIPGAKVPIRMWTDPASVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEEAIPVGRGMHDSPVEPG
RFHGLATGGWDDFWGRFEGVAEAVKFRQERATKQMGTLGSGNHMIEVCLDQSDSVWLMLH
SGSRNIGKELAEYHIGVAQKLPHNQGLVDRDLAVFVSDTPQMAAYRNDLYWAQEYAKYNR
AIMMALLKDVIRKEFKKAKPTFETEISCHHNYVAEERYEGVDLLVTRKGAIRAGSGEFGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTTKDLEEQTRGVECRKDSG
VLDEIPGAYKNIDQVMEQQCDLVEVEAKLKQFICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagagataccgggcgccaaggtacccatccgcatgtggacggacccggcg
tcggtcgaggacgtggccctgcgccagctccagaacgtggccaccctcccgtggatcaag
ggcctcgccgtcatgccggacgtccactacggcaagggcgcgacggtcggctcggtcatc
gccatgcgtgacgcggtgtgtccggcggcggtgggggtcgacatcgggtgcgggatgtct
gcggtcaggacgtcgctcacggccaatgatctgccgggggatctttcgcggcttcggtcg
aagatcgaggaggcgattccggtggggcgggggatgcatgactccccggtcgagccgggg
cggttccatgggctggctaccggggggtgggacgacttctgggggcggttcgagggggtc
gcggaggcggtcaagttccggcaggaacgtgcaaccaagcagatggggacgcttggaagt
ggcaaccacatgatcgaagtgtgtcttgatcagtcggattcggtctggctgatgctgcac
tccggctcccggaacatcggcaaggagctggccgagtaccacatcggtgtggcccagaag
ctcccgcacaatcagggtttggtcgatcgtgacctggcggtgttcgtctcggatactccg
cagatggcggcgtacaggaacgatctgtactgggcccaggagtatgccaagtacaaccgt
gcgatcatgatggcgctcctgaaggatgtaatccggaaggaattcaagaaggcgaagccg
accttcgagacggagatttcctgccaccacaactacgtggcggaggagcggtacgagggc
gtggatctgttggttacccgcaagggtgcgatccgcgcgggctccggcgagttcgggatt
attccgggctccatgggcacgagctcgtacatcgtgaaggggctcggcaatgagaaggct
ttcaactcggcatcccacggcgcgggtcggcgtatgagccggaacgctgcgaagcgccgt
ttcacgacgaaggacctggaggagcagacgcggggtgtcgagtgccgcaaggactccggc
gtgctggacgagattccgggggcctacaagaacatcgaccaggtgatggagcagcagtgc
gatctcgttgaagtcgaggcgaaactgaagcagttcatctgtgtgaagggctga
DBGET
integrated database retrieval system
