Streptomyces sp. Sge12: B6R96_09935
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Entry
B6R96_09935 CDS
T11356
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stsg Streptomyces sp. Sge12
Pathway
stsg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stsg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6R96_09935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stsg03019
]
B6R96_09935
Messenger RNA biogenesis [BR:
stsg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6R96_09935
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ARE74212
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Position
complement(2312307..2313992)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPKLPKGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIDGIVLTHGHEDHIGAVPYLLREKADIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGEREALGPFDCEFIAVNHSIPDALAVAIRTGAGLVVATGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNAIRGVFASAQKRIIVAS
FASHVHRIQQILDAAHEFDRRVAFVGRSMVRNMGIARDLGYLKVPAGLIVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGAMTGVPKD
RIVIAEDGVVVDLIDGKARISGKVQAGYVYVDGLSVGDVTEASLKDRRILGDEGIISVYV
VVDSTTGKVVSGPNIQARGSGIEDSAFSSVIAKIEESIARAAADGVAEPHQIQQLIRRTM
GKWVSDGYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccatccgcatccggaactcggtccgccgccgaagctgcccaagggcggcctcaga
gtcacccctctgggtggtctcggcgagatcggccgcaacatgaccgtcttcgagtacgac
ggccgtctgctgatcgtcgactgcggcgtcctcttccccgaggaggagcagccgggcatc
gacctgatcctgccggacttctcgtccatccgggaccgcctcgacgacatcgacggcatc
gtcctcacgcacggccacgaggaccacatcggcgccgtcccctacctcctccgggagaag
gcggacatcccgctgatcggctccaagctgacgctggccctcatcgaggcgaagctccag
gagcaccgcatccgcccctacacccttgaggtgaaggagggcgagcgcgaggccctgggc
cccttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctggccgtggcg
atccgtaccggcgccggcctggtcgtggccaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgcattcgcgcggctgagcgaggagggcatcgac
ctcctcctctccgactccacgaacgccgaggtcccgggcttcgtcccgcccgagcgcgac
atctccaacgccatccgcggggtcttcgcgagtgcccagaagcggatcatcgtggcgtcg
ttcgccagccacgtgcaccgcatccagcagatcctcgacgccgcccacgagttcgaccgc
agggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgtgatctgggc
tacctgaaggtcccggccggtctgatcgtcgacgtcaagacgctcgacgacctgccggac
gacgaggtcgtgctggtctgcacgggttcccagggcgagccgatggcggccctgtcccgc
atggccaaccgcgaccaccagatccggatcgtcccgggcgacaccgtgatcctcgcgtcg
tccctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacgcgctgg
ggcgccaacgtcgtgcacaagggcaatgccaaggtgcacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgcggaacctcatgccggtccacggc
gaatggcgccacctgcgtgccaacgccgagctcggtgccatgacgggcgtcccgaaggac
cgcatcgtcatcgccgaggacggcgtggtcgtcgacctgatcgacggcaaggcccggatc
tccggcaaggtccaggccggctacgtgtacgtggacggcctctcggtcggcgacgtcacc
gaggcctcgctcaaggaccgccggatcctcggtgacgagggcatcatctcggtctacgtc
gtcgtggacagcaccaccggcaaggtggtcagcggcccgaacatccaggcccgcggttcc
ggcatcgaggactcggccttctcctcggtcatcgcgaagatcgaggagtccatcgcccgc
gcagcggccgacggcgtcgccgagccgcaccagatccagcagctcatccgccgcacgatg
ggcaagtgggtctcggacggctaccgccgccgtccgatgatcctcccggttgtcgtcgag
gtctga
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