Streptomyces qaidamensis: A4E84_39715
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Entry
A4E84_39715 CDS
T04777
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stsi
Streptomyces qaidamensis
Pathway
stsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4E84_39715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stsi03019
]
A4E84_39715
Messenger RNA biogenesis [BR:
stsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4E84_39715
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AMW15051
UniProt:
A0A143CC88
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All DBs
Position
complement(9050133..9051818)
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AA seq
561 aa
AA seq
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MSHPHPNLKAAPPLPAGGLRVVALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEENQPGV
DVILPDFTSIRDRLDDIVAIVLTHGHEDHIGGVPYLLRERSDIPVVGSKLTLAFLEAKLK
EHGIRPRSVRVREGDRRGFGPFDCEFVAVNHSIPDSLAVALRTSAGLVLHTGDFKMDQFP
LDDRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERELNPAIEQVMRTAPRRVIVSS
FASHVHRIQQVLDAAHAHGRKVAFVGRSMVRNMGIARDLGYLKVPSGLVVNAKELEKLPD
HRVTLVCTGSQGEPMAALSRMANRDHQIRIGKGDTVLLASSLIPGNENAIYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELVYCYNIVRPRNVMPVHGEFRHLRANADLAIRTGVDPE
RVVIAEDGVVVDLVDGRAAITGKVPAGNVYVDGMEVGGATEASLKDRLTLAEEGVVTVVA
IVDADTGALAEAPDFLARGFVHDETTFEPVIPVIEKTLANAAQEGVGDAHQLEQLIARAV
ANWAFRTHRRRPLVIPVIIDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatccgcaccccaacctgaaggccgccccgcccctgcctgccggaggcttgaga
gtcgtcgccctcggcggcctgggcgagatcggccgcaacatgaccgtcttcgagcacgcc
ggcaaactgctcatcgtggactgcggggtgctgttccctgaggagaaccagcccggcgtg
gacgtgatcctgccggacttcacctcgatcagggaccgcctcgacgatatcgtggccatc
gtcctcacccacggccacgaagaccacatcggcggcgtgccctatctgctgcgggagcgg
tcggacattcccgtcgtcggctcgaagctcaccctggccttcctggaggccaagctcaag
gaacacgggatcaggccccgctcggtgcgtgtacgcgagggcgaccggcgtggtttcggt
cccttcgactgcgagttcgtggccgtcaaccactccatcccggacagcctcgcggtggcc
ctgcgcacctcagccgggctggtgctgcacaccggcgatttcaagatggaccagttcccg
ctggacgaccggatcaccgacctgcgtgccttcgcccggctcggcgaggagggggtggat
ctgttcctcaccgactccaccaacgccgaggtccccggcttcaccacctccgaacgcgag
ctgaaccccgcgatcgagcaggtgatgcgcacggcgccgcggcgggtgatcgtctccagc
ttcgccagccacgtgcaccgcatccagcaggtcctggacgccgcccatgcgcacggccgc
aaggtggccttcgtgggccgttcgatggtccgcaacatgggcatcgcccgcgacctgggc
tatctcaaggttccgtccggcctggtcgtgaatgccaaggagctggagaagctgccggac
caccgggtcaccctggtgtgcacgggctcccagggcgaacccatggcggcactgtccagg
atggccaaccgtgaccaccagatccgcatcggcaagggcgacaccgtcctgctcgccagt
tccctcatccccggcaacgagaacgccatctaccgggtgatcaacggcctgacccggtgg
ggcgccaacgtcgtccacaaggggaacgccaaggtgcacgtctccggccacgccagcgcc
ggggagctcgtctactgctacaacatcgtccgcccccgtaacgtcatgcccgtccacggc
gagttccgtcacctgcgggccaacgccgacctcgccatccgcaccggcgtcgaccccgag
cgggtcgtcatcgccgaggacggtgtcgtcgtcgacctcgtcgacggccgcgccgccatc
accggcaaggtgcccgcgggcaacgtctacgtggacgggatggaggtcgggggcgcgacg
gaggcctccctgaaggaccgcctcaccctggccgaggaaggcgtcgtcaccgtcgtggcc
atcgtcgacgccgacaccggcgccctggccgaggctccggacttcctggcccgcggcttc
gtccacgacgagaccaccttcgagcccgtcatccccgtcatcgagaagacgttggccaac
gccgcccaagagggtgtcggcgacgctcaccagctcgaacagctcatcgcccgggccgtg
gccaactgggcgttccgcacccaccgtcgcaggccgctggtcatcccggtcatcatcgac
gcctga
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