Streptomyces sp. SM17: B9S66_12085
Help
Entry
B9S66_12085 CDS
T11645
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stsm Streptomyces sp. SM17
Brite
KEGG Orthology (KO) [BR:
stsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stsm03016
]
B9S66_12085
Enzymes [BR:
stsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B9S66_12085
Transfer RNA biogenesis [BR:
stsm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B9S66_12085
Prokaryotic type
tRNA splicing ligases
B9S66_12085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWL32875
LinkDB
All DBs
Position
complement(2797457..2798650)
Genome browser
AA seq
397 aa
AA seq
DB search
MAYQEIPGARVPIRMWADPAGVEEAAMRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEEAIPVGRGMHERPVDPT
RTHGFGTNRWDAFWDRFDTVADSVHFRRERAAHQMGTLGSGNHFVEVCVDTDGDVWLMLH
SGSRNIGKELADHHIGVARDLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYARYNR
TLMMDLLKQVVSREFKKARVAFEPEISCHHNYVSEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNEASFNSASHGAGRRMSRNAAKRRFSLRDLAEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAQLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcttaccaggagattccgggcgcgcgggtacccatccgcatgtgggccgacccggcg
ggggtcgaggaggcggcgatgcgccagctccagaacgtcgccaccctgccgtggatcaag
ggcctcgccgtcatgcccgacgtgcactacggcaagggcgccaccgtcggctcggtgatc
gccatgcgcgacgcggtctgcccggccgccgtcggcgtcgacatcggctgcggcatgtcg
gcggtgcgcacctcgctcactgccaacgatctgcccggggacctctcccggctgcgctcc
aggatcgaggaggccatcccggtcgggcgcgggatgcacgagcggcccgtcgacccgacg
cgtacgcacggcttcggcaccaaccgctgggacgccttctgggaccgcttcgacaccgtc
gccgactccgtccacttccggcgcgagcgggccgcgcaccagatgggcacgctcggctcc
ggcaaccacttcgtcgaggtctgcgtcgacaccgacggcgacgtctggctgatgctgcac
tccggctcgcgcaacatcggcaaggaactcgccgaccaccacatcggcgtcgcccgcgac
ctgccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaggtacaaccgc
acgctgatgatggacctgctcaagcaggtcgtctcccgcgagttcaagaaggcgcgagtc
gccttcgagccggagatctcctgccaccacaactacgtgagtgaggagcggtacgacggg
atggacctgctcgtcacgcggaagggagcgatccgggccggcagcggggactacgggatc
atccccgggtcgatggggaccgggtcgtacatcgtgaaggggctcgggaacgaggcctcc
ttcaactccgcctcgcacggggccgggcggcggatgagccggaacgcggccaagcggagg
ttctccctgcgggatctggccgagcagacgcggggtgtggagtgccggaaggactccggg
gtcgtggatgagattccgggggcctacaagcccatcgagcaggtcatcgaccagcagcgg
gatctggtcgaggtggtggctcagctcaagcaggtcgtctgcgtcaaggggtga
DBGET
integrated database retrieval system
