Streptomyces tsukubensis: B7R87_11830
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Entry
B7R87_11830 CDS
T07155
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stsu
Streptomyces tsukubensis
Pathway
stsu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7R87_11830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stsu03400
]
B7R87_11830
Enzymes [BR:
stsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7R87_11830
DNA repair and recombination proteins [BR:
stsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B7R87_11830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZK94470
LinkDB
All DBs
Position
complement(3031343..3034873)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVEAARGAGRMHVDLVGPPAARPFAVAALARDAGRTVLAVTA
TGREAEDLAAALRSLLPEDSVAEYPAWETLPHERLSPRSDTVGRRLAVLRRLVHPSADDP
ATGPVSVVVAPIRSVLQPQVKGLGELVPVALRTGEQADLNEVVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKIADQRSLEVAEHGLWAPPCRELL
LTPQVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPDGAMTL
VCDPERVRTRAADLVATSREFLHASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWTVAPFAADEELSEDTVKLGMHAPDSYRGDTARALADTKGWLADNWRTVFVTEAHGPAA
RTVEVLGGEGVPARLDTDLTEIAPGVVQVATGSIDYGFIDPGLRLAVLTETDLTGQKAAG
KDGRRMPTRRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIRLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQSDTEAKA
TLEGLRDGMVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSENVLEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGA
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANSEEDVKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGNNIRFAPVELRESQELRLMRLYPRTVVKPAMN
QILVPRPTTGKIGGKPVVGRELLAWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgcagtcgtacgtgaccccgcgctcgccgaggccgtc
gaggccgcccgtggcgcgggacggatgcacgtggatctggtggggccgcccgccgcccgg
cccttcgccgtcgccgcgctggccagggacgccgggcggaccgtcctcgcggtcaccgcg
accggccgcgaggccgaggacctggccgcggccctgcgctccctgctgcccgaggactcc
gtggccgagtaccccgcctgggagaccctgccccacgagcgcctctcgccccgctccgac
acggtgggccgtcggctcgccgtgctccgccggctggtccacccctccgccgacgacccg
gccacagggcccgtctccgttgtggtcgccccgatccgctccgtactccagccgcaggtc
aagggcttgggcgagctggttcccgtggccctgcgcaccggcgagcaggccgatctgaac
gaggtcgtcgacgcgctcgccgccgccgcgtactcccgggtggagctggtcgagaagcgc
ggcgagttcgccgtccgcggcggcatcctggacgtcttcccgcccaccgaggagcacccc
ctccgggtggagttctggggcgacgacatcgaggagatccgctacttcaagatcgctgac
cagcggtcgctggaggttgccgagcacggtctgtgggcgccgccctgccgtgagctgctg
ctcaccccccaggtccgggagcgggccgccgcgcttgccgaggcccaccccgagctgggc
gaactcctcggcaagatcgcggaggggattgcggtcgagggcatggagtcccttgcgccg
gtcctcgtcgacgatatggagctgctgctcgacgtcctcccggacggtgcgatgaccctg
gtctgcgaccccgagcgggtccggacccgggcggccgacctggtcgccacctcgcgggag
ttcctccacgcctcctgggccgcgaccgcgggcggcggcgaggcgcccatcgacgtcggc
gccgcgtcgctgtggagcatcgcggacgtccgcgaccgggcccgtgaactggacatgatg
tggtggacggtggcgcccttcgccgccgacgaggagctgtccgaggacaccgtcaaactc
gggatgcacgccccggactcgtaccgcggcgacaccgcccgcgcccttgccgacaccaag
ggctggctggcggacaactggcgtacggtcttcgtcaccgaggcccacggcccggccgcg
cgcaccgtcgaggtcctcggcggcgagggcgtcccggcccggctcgacaccgacctcacc
gagatcgcccccggagtcgtccaggtggcgaccggctccatcgactacggcttcatcgac
cccgggctccgcctcgccgtcctcaccgagaccgatctcaccggccagaaggccgcgggc
aaggacggccggcggatgccgacccgccgccgcaagacgatcgacccgctgaccctggag
accggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cggaccgtccagggcgcgacccgcgagtacctcgtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccggctcggcggcgcggactggaccaagaccaag
gcgcgggcgaagaaggccgtcaaggagatcgccgccgatctgatccgcctctactcggcc
cggatggcggcccccggccacaccttcggccccgacaccccctggcagcgggagctggag
gacgccttcccgtacgcggagacccccgaccagctgtccaccatcgccgaggtgaaggag
gacatggagaagtcggtccccatggaccggctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtacgggccgcgttcaaggccgtccaggacggcaagcaggtcgccgtc
ctcgtcccgacgaccctgctggtgcagcagcatttcggcaccttctccgagcggtactcg
cagttcccggtgaacgtccgcgccctgtcccgcttccagtccgacaccgaggccaaggcc
accctggagggactgcgggacggcatggtcgacgtcgtcatcggcacccaccggctgttc
tcgtccgagaccaagttcaaggacctcgggctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtactgacgatg
tccgcgaccccgatcccgcggaccctggagatggccgtcaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcggcaccccgtcctcaccttcgtcggcccgtacgag
gagaagcagatcggcgccgcgatccgccgcgaactcctccgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgggcggcggcccggctgcgggagatcgtgccg
gaggcgcggatcgccaccgcccacggccagatgtcggagaacgtactcgaacaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctggtgtcgacgacgatcgtcgagtccggt
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggactgtcg
cagctgcaccagttgcgcggccgggtgggccggggccgggagcgggggtacgcgtacttc
ctctacccgccggagaagccgctcaccgagaccgcccacgaacgcctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaatctcctcggcggcgagcagtccggccatatcgcgggcgtcggtttcgatctg
tacgtacggatggtgggcgaggcggtcgccgactaccgggcgtccctggagggcggcgcg
gaggaggagcccccgctggaggtcaagatcgaactcccggtcgacgcgcatgttccgcat
gactatgcccctggcgagcgcctccgtctccaggcctaccggtcgatcgccgcggccaat
tcggaggaggacgtcaaggcggtacgggaggagctgaccgaccgctacggcaagctgccc
gagccggtggagaacctcctcctcgtcgccggtctgcggatgctggcccgcgcctgcggc
gtgggcgagatcgtcctccagggcaacaacatccgcttcgccccggtggaactgcgggaa
tcgcaggagctgcgcctgatgcggctctatccgcggacggtggtgaagccggccatgaac
cagatcctggtcccgcgcccgacgaccggcaagatcggcggaaagccggtggtgggaagg
gagctgctggcgtggacgggtgaattcctgaccacgattctgggcagctag
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