Streptomyces tsukubensis: B7R87_19465
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Entry
B7R87_19465 CDS
T07155
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stsu
Streptomyces tsukubensis
Brite
KEGG Orthology (KO) [BR:
stsu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stsu03016
]
B7R87_19465
Enzymes [BR:
stsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B7R87_19465
Transfer RNA biogenesis [BR:
stsu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B7R87_19465
Prokaryotic type
tRNA splicing ligases
B7R87_19465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZK95793
LinkDB
All DBs
Position
4699430..4700635
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AA seq
401 aa
AA seq
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MSYTEVPGEQVPIRMWTDPAGVEDVAMAQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKSSLTANDLPGDLSGLRSRIEQAIPVGRGMHGEPVDTG
RVYGFGDTASPEGWSDFWDRFDTVADAVKFRRGRALQQMGTLGSGNHFVEVCLDEDGAVW
LMLHSGSRNIGKELADHHIGIARGLDHNQGLVDADLAVFLAETPEMGAYRNDLFWAQEYA
KYNRAIMMGLLQEVVRGQFRKAKVTFGEVISCHHNYVAEERYDGMDLLVTRKGAIRAGSG
DYGIIPGSMGTGSYIVRGLGNEKSFNSASHGAGRRMSRNQAKKRFSTRDLEDQTRGVECR
KDSGVVDEIPSAYKPIEQVIQAQTDLVEVVAKLKQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacacagaggttccgggggagcaggttcccatccggatgtggacggatccggcg
ggcgtcgaggacgtcgccatggcacagctccgcaatgtcgccacgctgccgtggatcaag
gggctcgcggtgatgccggacgtgcattacggcaagggcgccacggtcggatccgtgatc
gcgatgaaggacgcggtctgcccggcggcggtcggcgtcgacatcggctgcggaatgtcc
gcggtgaagtcgtccctgacggcgaacgacctgcccggtgatctctccgggctgcggtcg
cgcatcgagcaggcgatccccgtcggccgcgggatgcacggcgagccggtggacacgggg
cgggtgtacggattcggcgacaccgcctctccggagggctggagcgatttctgggaccgc
ttcgacaccgtcgccgacgcggtgaagttccgccgcggccgggcgctccagcagatgggc
acgctcggctcgggcaaccacttcgtcgaggtgtgcctggacgaggacggcgcggtctgg
ctgatgctgcactccggctcccgcaatatcggcaaggagctggccgaccaccacatcggc
atcgcccgcggactcgaccacaaccagggcctggtcgacgccgatctggcggtgttcctc
gccgagaccccggagatgggcgcgtaccggaacgacctgttctgggcgcaggagtacgcc
aagtacaaccgcgcgatcatgatgggcctgctccaggaggtcgtccgcggccagttccgg
aaggcgaaggtcaccttcggcgaggtcatctcctgccaccacaactacgtggcggaggag
cggtacgacggaatggacctgctggtcacccggaagggcgcgatccgcgcgggctccggc
gactacgggatcatccccggctccatgggcaccggctcgtacatcgtgcgcggtctgggc
aatgagaagtccttcaactccgcttcccacggcgccggccgccggatgagccgcaaccag
gcgaagaagcgtttctcgacccgggatctggaggaccagacccggggtgtggagtgtcgc
aaggacagcggtgtggtcgacgagatccccagcgcgtacaagcccatcgaacaggtcatc
caggcccagacggacctggtggaggtcgtggcgaagctgaagcaggtcgtctgcgtgaag
ggctga
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