Salmonella enterica subsp. enterica serovar Typhi Ty2: t3198
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Entry
t3198 CDS
T00121
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stt
Salmonella enterica subsp. enterica serovar Typhi Ty2
Pathway
stt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
t3198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stt03019
]
t3198
03009 Ribosome biogenesis [BR:
stt03009
]
t3198
Enzymes [BR:
stt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
t3198
Messenger RNA biogenesis [BR:
stt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
t3198
Ribosome biogenesis [BR:
stt03009
]
Prokaryotic type
rRNA helicases
t3198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AAO70736
UniProt:
Q8Z3I1
LinkDB
All DBs
Position
complement(3287491..3289431)
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AA seq
646 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKIQPSAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREERPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERR
EGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcccttaccgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcgccaacc
cgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccctgtacggcggtcagcgttatgacgtgcagttacgcgccctgcgt
caggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcacttaaaacgcggc
accctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaaatgctgcgt
atgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggtcatcaaacc
gctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggtatgcgtaaaaacgaagcactggtgcgtttcctggaagcggaa
gactttgatgcggcgattatcttcgtacgtaccaaaaacgcgaccctggaagtagcagaa
gcgctggaacgtaacggctacaacagcgccgcgttgaatggcgatatgaaccaggcgctg
cgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatcgccaccgat
gttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactacgatattccg
atggactccgagtcctacgttcaccgtatcggtcgtaccggtcgtgcgggtcgcgccggt
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaacgcacc
atgaagctgaccattccagaagtggaactgccgaacgcagaactgctgggtaaacgccgt
ctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctggatcagtac
cgtgcgctgctggcgaaaatccagccgtctgccgaaggtgaagagctggatctcgaaacg
ctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgattctgccgccggat
gcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccgcgcgatcgt
aatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaagttcgtcat
atcgtgggcgctatcgctaacgaaggcgacattagcagccgttacattggtaacattaag
ctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaagtgctccag
cacttcacgcgtactcgcattctgaacaagccgatgaatatgcagctgttgggtgatgcg
gttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggcgaacgtcgt
gaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgatggtcgtcgc
ttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctaccggtcgccgt
cgtttcggcggtgatgcgtaa
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