Salmonella enterica subsp. enterica serovar Typhi Ty2: t3474
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Entry
t3474 CDS
T00121
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stt
Salmonella enterica subsp. enterica serovar Typhi Ty2
Pathway
stt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
t3474 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stt03021
]
t3474 (rpoB)
03400 DNA repair and recombination proteins [BR:
stt03400
]
t3474 (rpoB)
Enzymes [BR:
stt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
t3474 (rpoB)
Transcription machinery [BR:
stt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
t3474 (rpoB)
DNA repair and recombination proteins [BR:
stt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
t3474 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AAO70990
UniProt:
Q8Z320
LinkDB
All DBs
Position
complement(3566936..3570964)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaagtttatcgag
caagatcctgaagggcagtacggcctggaagcagccttccgttccgtgttcccgattcag
agctacagcggtaattccgagctgcagtacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaactcactcttcgggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtgcgtatcgaccgt
cgccgtaaactgcctgcgaccatcatcctgcgtgcgctgaactacaccactgagcagatc
cttgacctgttctttgagaaagtcgtcttcgaaattcgcgacaacaagctgcagatggag
ctgattccagaacgtctgcgcggcgaaaccgcgtcgttcgatatcgaagctaacggcaag
gtgtacgttgaaaaaggccgtcgcattaccgcgcgtcatatccgtcagctggaaaaagac
gatatcaagcatatcgaagttccggttgagtacatcgcaggtaaagtcgtctctaaagac
tacgttgacgaatctactggcgagctgatctgcgcggcgaacatggagctgagcctggat
ctgctggctaagctgagccagtccggccacaagcgtatcgaaacgctgtttaccaacgat
ctggaccacggcccgtacatttctgaaacggtacgcgtcgatccaactaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgacacgcgaagcg
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctatgacctgtctgcggtg
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgtcatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgcc
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgc
gaacgcgcaggcttcgaagttcgagacgtacacccgacgcactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatatggcttccttgagacgccgtaccgtcgtgtggttgatggcgtggttact
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggtaacctgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtttccacccagcaggtg
gtctccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgtgctgataagccgctggtg
ggtaccggtatggaacgtgctgtcgccgtcgactccggtgttactgcagtagctaaacgt
ggcggtactgttcagtacgtggatgcatcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggtgaagcaggtatcgacatctataacctgaccaaatacacccgctctaac
cagaacacctgtatcaaccagatgccatgtgtgtctctgggcgagccggttgaacgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacatcggcgcggaagtgactggcggc
gacattctggtcggtaaggtaacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
cctaacggtgtctccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgctctggaaatcgaagagatgcagctcaagcaggcgaaaaaagacctg
tctgaagaactgcagatcctcgaagcgggcctgtttagccgtatccgtgcggtgttggtg
tccggcggcgttgaagctgagaagctcgacaaactgccgcgcgaccgctggctggaactc
ggtctgaccgacgaagagaaacaaaatcagctggaacaactggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaacttgaagcgaagcgccgtaaaatcacccagggcgac
gatctggcgccgggcgtgctgaagatcgtgaaggtctatctggccgttaaacgccgtatc
cagccgggtgataagatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagacatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtattggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcctacgatctgggcgccgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgatgaagtgctgcgtctggcagaaaacctgcgcaaaggtatg
ccgattgccacaccagtgttcgacggtgcgaaagaagcggaaatcaaagagctgctgaaa
ctgggcgacctgccgacctccggtcagatcaccttgttcgatggccgtacgggtgaacag
ttcgaacgtccggtaaccgtcggttacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagct
tacggcgccgcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataagaacatcgtggacggcaaccatcagatggaaccgggtatgccg
gaatccttcaacgttctgttgaaagagatccgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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