Streptomyces tubbatahanensis: MMF93_09645
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Entry
MMF93_09645 CDS
T08938
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stub
Streptomyces tubbatahanensis
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stub03016
]
MMF93_09645
Enzymes [BR:
stub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MMF93_09645
Transfer RNA biogenesis [BR:
stub03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MMF93_09645
Prokaryotic type
tRNA splicing ligases
MMF93_09645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UNS96747
UniProt:
A0ABY3XQK4
LinkDB
All DBs
Position
2246640..2247833
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AA seq
397 aa
AA seq
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MSHVEMPGARVPIRMWADPASVEDAALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRVEQAIPVGRGMHDDPVDPG
RVHGLPTTGWEDFWARFGGVAESVRFRQERATKQMGTLGGGNHFIEVCLDTEDQVWLMLH
SGSRNIGKELADFHIGVAQKLPHNQGLVDRDLAVFVADTPQMGAYRHDLFWAQEYAKHNR
ALMMGLLKDVVRKEFKKAKPVFDETLSCHHNYVAEERYDGMDLLVTRKGAIRAGGGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRRMSRNAAKRRFSEQDLAEQTRGVECRKDAG
VVDEIPGAYKPIERVIDQQRDLVEVVTKLKQIVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacgtcgagatgcccggggcgcgggtgccgatccggatgtgggcggacccggcg
tccgtggaggacgcggccctgcggcagttgcagaacgtcgcgaccctgccctggatcaag
gggctcgcggtgatgccggacgtgcactacgggaagggcgccacggtcgggtccgtcatc
gcgatgcacggggcggtctgcccggcggcggtgggtgtcgacatcgggtgcggcatgtcc
gccgtgcggacgtcgctgacggccaacgacctgcccggtgacctctcgcggctgcgctcg
cgggtcgagcaggccattccggtcggccgcgggatgcacgacgatcctgtggatcctggc
cgcgtccacgggctgccgaccaccgggtgggaggacttctgggcgcgcttcggcggcgtg
gccgagtccgtacggttccggcaggagcgcgccaccaagcagatgggcacgctcggcggg
ggcaaccacttcatcgaggtgtgtctcgacaccgaggaccaggtgtggctgatgctgcac
tccggttcgcgcaacatcggcaaagagctcgcggacttccacatcggtgtggcgcagaag
ctgccgcacaaccagggtctggtcgaccgcgacctggcggtcttcgtcgccgacaccccg
cagatgggggcctaccggcacgacctgttctgggcgcaggagtacgccaagcacaaccgt
gcgctgatgatgggtctgctcaaggacgtcgtgcgcaaggagttcaagaaggcgaagccg
gtcttcgacgagacgctctcctgccaccacaactacgtggcggaggagcgctacgacggt
atggatctcctcgtcacccgtaagggcgccatccgtgcgggcggcggcgagtacgggatc
atccccggttccatgggcaccggctcctacatcgtcaagggtctggggaacgcggcgtcg
ttcaactcggcctcgcacggtgcagggcggcgcatgagcaggaacgcggccaagcgccgc
ttctccgagcaggatctggcggagcagacccggggggtcgagtgccgcaaggacgcgggg
gtggtggacgagatccccggcgcgtacaagccgatcgagcgcgtcatcgaccagcagcgc
gacctggtggaggtcgtcaccaagctgaagcagatcgtgtgtgtgaaggggtga
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