Streptomyces tubbatahanensis: MMF93_19640
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Entry
MMF93_19640 CDS
T08938
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stub
Streptomyces tubbatahanensis
Pathway
stub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMF93_19640 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stub03021
]
MMF93_19640 (rpoB)
03400 DNA repair and recombination proteins [BR:
stub03400
]
MMF93_19640 (rpoB)
Enzymes [BR:
stub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMF93_19640 (rpoB)
Transcription machinery [BR:
stub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMF93_19640 (rpoB)
DNA repair and recombination proteins [BR:
stub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMF93_19640 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UNS98413
LinkDB
All DBs
Position
4558015..4561497
Genome browser
AA seq
1160 aa
AA seq
DB search
MAASRTASTANSNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKGRVEA
ALDSGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTDKGTFVINGTERVVVTQLVRSPGAYFDSSID
KTSDKDIYSAKIIPSRGAWLEMEVDKRDMVGVRIDRKRKQSVTVLLKALGWTNEQILEEF
GQYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKINKKLGGEEPLNSGVLTSADIIATIKYLVKLHAGETESTSAEGDTIIIETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPISGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRKVVGGVVSDEAHYLTADEEDRFVIAQANAPLTEEMRF
AEDRVLVRRRGGEVDLIPGDEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAESPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYVTVANDDGTYTTYRVAK
FTRSNQGTSFNQKVLVDEGARVIEGQVLADGPSTDEGEMALGKNLLVAFMPWEGYNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVEAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGSEEWMERLKAIGADEVAPKTNVATPV
FDGAREDEIAGLFESTMPNRDGDRMVQPSGKAQLFDGRSGEPFPDPISVGYMYILKLHHL
VDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDV
TGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFR
AAEELGIDLSRREPSSVEEV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcactgcctcgactgccaattcgaacaacggcgccagcactgccccg
ctgcgtatctcttttgcgaagatcaaggaaccgctggaggttccgaaccttctcgcgctc
cagaccgagagcttcgactggctgctcggcaacgacgcctggaagggacgcgtcgaggct
gcgctggacagtggacaggatgttcccaccaagtccggtctggaggagatcttcgaggag
atctccccgatcgaggacttctccggctcgatgtcgctgacgttccgcgaccaccgcttc
gagcccccgaagaactccatcgacgagtgcaaggagcgcgacttcacctacgccgcgccg
ctcttcgtcacggcggagttcaccaacaacgaaaccggtgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccgacaagggcaccttcgtgatcaacggcaccgag
cgtgtcgtcgtcacgcagctcgtccgctcgccgggcgcctacttcgacagctccatcgac
aagacgtccgacaaggacatctactccgccaagatcatcccgtcccggggtgcctggctg
gagatggaggtcgacaagcgcgacatggtcggtgtgcgcatcgaccgcaagcgcaagcag
tccgtcaccgtgctgctcaaggcgctcgggtggacgaacgagcagattctcgaggagttc
ggccagtacgagtcgatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtcctggcgagccgccgacgcgcgaggccgcg
cagacgctgctggagaacctctacttcaacccgaagcgctacgacctggccaaggtcggc
cggtacaagatcaacaagaagctcggcggcgaggagccgctgaactccggcgtgctcacc
agcgccgacatcatcgccacgatcaagtacctggtgaagctgcacgccggtgagaccgag
tcgacctcagccgagggcgacacgatcatcatcgagaccgacgacatcgaccacttcggc
aaccgccgtctgcgcaacgtcggcgagctgatccaaaaccaggtccgcaccggtctcgcc
cgtatggagcgcgtcgtccgcgagcggatgaccacgcaggacgtcgaggcgatcacgccg
cagacgctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagacgaacccgatctcgggtctcacccacaagcgccgc
ctcaacgcgctgggcccgggtggtctcagccgtgagcgggccggcttcgaggtccgtgac
gtgcacccctcgcactacggccggatgtgcccgatcgagacgccggaaggcccgaacatc
ggcctgatcggctcgctcgcctcctacggccgcgtgaacgcgttcggcttcgtcgagacg
ccgtaccgcaaggtggtcggcggtgtcgtcagcgacgaggcgcactacctcaccgccgac
gaggaggaccgcttcgtgatcgcccaggcgaacgcgcccctcaccgaggagatgcgcttc
gccgaggaccgggtcctcgtccgccgccgtggcggcgaggtcgacctgatcccgggtgac
gaggtggactacatggacgtctcgccgcgccagatggtgtcggtcgcgacggccatgatc
cccttcctggagcacgacgacgccaaccgcgccctgatgggctcgaacatgatgcggcag
gccgtgccgctcatcaaggccgagtcgccgctggtgggcaccggcatggagtaccgctgc
gcggtcgacgccggtgacgtcatcaaggccgagaaggacggtgtcgtccaggaggtctcc
gccgactacgtcacggtggccaacgacgacggcacctacaccacctaccgcgtcgccaag
ttcacccgctccaaccagggcacctccttcaaccagaaggtgctggtggacgagggcgcc
cgcgtcatcgagggccaggtgctggccgacggcccgtccaccgacgagggtgagatggcg
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggctacaactacgaggacgcg
atcatcctcagccagcggctggtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctgggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctggccgacctcgacgagcgcggcatcatccgcatcggcgcc
gaggtcgaggcgggcgacatcctcgtcggcaaggtcaccccgaagggtgagaccgagctg
acccccgaggagcggctgctgcgcgcgatcttcggcgagaaggcgcgcgaggtccgtgac
acctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggcgtgcgcgtcttcgac
cgcgaggagggcgacgagctgcctccgggcgtcaaccagctggtgcgcgtctacgtcgcg
cagaagcgcaagatcaccgacggtgacaagctcgcgggccggcacggcaacaagggcgtc
atctccaagatcctgccggtcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccctcccggatgaacccgggccaggtcctggagatc
cacctgggctggctggcctcccagggctggaaggtcgagggctccgaggagtggatggag
cggctgaaggcgatcggcgccgacgaggtggcgccgaagaccaacgtggccacgccggtc
ttcgacggtgcccgcgaggacgagatcgccggtctgttcgagtccacgatgcccaaccgc
gacggtgaccgcatggtccagccgtccggcaaggcgcagctgttcgacggccgctccggc
gagccgttcccggacccgatctccgtcggctacatgtacatcctcaagctgcaccacctg
gtcgacgacaagctgcacgcgcggtcgaccggtccgtacagcatgatcacccagcagccg
ctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggccctg
gaggcgtacggcgccgcgtacgcgctgcaggagctgctcaccatcaagtccgacgacgtc
accggacgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccgggt
atccccgagtccttcaaggtgctcatcaaggagatgcagtcgctctgcctcaacgtcgag
gtgctgtcgtcggacggcatgtcgatcgagatgcgcgacaccgacgaggacgtcttccgc
gcggcggaggagctcggaatcgacctgtcccggcgcgagccgagcagcgtcgaagaggtc
tga
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integrated database retrieval system
