Streptomyces tubbatahanensis: MMF93_19645
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Entry
MMF93_19645 CDS
T08938
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stub
Streptomyces tubbatahanensis
Pathway
stub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMF93_19645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stub03021
]
MMF93_19645
03400 DNA repair and recombination proteins [BR:
stub03400
]
MMF93_19645
Enzymes [BR:
stub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMF93_19645
Transcription machinery [BR:
stub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMF93_19645
DNA repair and recombination proteins [BR:
stub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMF93_19645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UNS98414
LinkDB
All DBs
Position
4561615..4565529
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVGVERQQIEQRRDADLEARAKKQEGD
LAELEAEGAKADVRRKVREGAEREMKQIRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLDEEAEKLREVIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEQRVTKGD
GRSFNSTAEAVMAFDAGELSLQAKIDIRFPVGTTPPLGWTPPVPEEGAEGEFAAEWQPGD
PFRLHTTLGRALFNELLPEEYPYVEYTVGKKQLSQIVNDLAERYPKVTVAAALDNLKSAG
YFWATRSGVTIAISDVVVPDAKPEIIAGYEAQDEKVQKQYERGLITKDERTQELIAIWTK
ATNDVSEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASF
REGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLS
IASKGADGVLRKAEDAETSVYARCLAEDIVVDGMVLAPAGTDLGDVLIDELVRHGVETVK
TRSILTCESQVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVVELFEARTPKGVAPISESAGRCRIEETEKTKKVVVTPDDGSDETSYSVS
KRARLLVGEGDHVSVGQKLTVGTENPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDK
HIEIIIRQMLRRVTIIESGDAELLPGELVERTKFEGENRRVVQEGGSPASGRPQLMGITK
ASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRV
EPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcgaatcggcctggccaccgctgacgacatc
cgtcagtggtcgcacggcgaggtcaaaaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggcgtgccgtcccgcctgggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgcacccgcgacctgccctccctggaggcgcacgtcggcgtggagcgccag
cagatcgagcagcgccgtgacgccgacctcgaggcccgcgccaagaagcaggaaggcgac
ctggccgagctggaggccgagggcgccaaggcggacgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagatccgcgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctggagggggacgagctgctc
taccgcgagctgcgcgaccgcttcgggacctacttcgacggctccatgggcgccgctgcc
ctgcagaagcgcctggagaccttcgacctggacgaggaggcggagaagctccgtgaggtg
atccgcaccggtaagggccagaagaagacccgtgccctcaagcggctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggctgaagcgtctgctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccggcgcggccgtccggtcaccgggcccggcaaccgtccgctcaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctcggcaag
cgtgtcgactactcggcgcgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtctacgacgtgctggaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgccgacgctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccattcagatccacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtcccgtgacgatgccgacgcaggac
atggttctgggtctgttcttcctcaccacggacgaggagcagcgcgtcaccaagggcgac
gggcgctcgttcaactcgaccgcggaagcggtgatggcgttcgacgccggggagctgtcg
ctccaggcgaagatcgacatccggttcccggtcggcaccaccccgccgctgggctggacg
ccgccggtgcccgaggagggtgccgagggcgagttcgccgccgagtggcagccgggagac
ccgttccggctgcacaccaccctgggccgtgcgctcttcaacgagctgctgcccgaggag
tacccgtacgtcgagtacacggtgggcaagaagcagctctcccagatcgtcaacgacctg
gccgagcgctacccgaaggtgacggtcgccgcggcgctggacaacctgaagtcggccggt
tacttctgggcgacccgctcgggtgtgacgatcgcgatctcggacgtcgtcgtcccggac
gccaagccggagatcatcgccggttacgaggcgcaggacgagaaggtccagaagcagtac
gagcgcggtctgatcaccaaggacgagcgcacgcaggagctcatcgcgatctggaccaag
gcgacgaacgacgtctccgaggcgatgaacgagaacttcccgaagacgaacccgatcttc
atgatggtggactcgggcgcccgagggaacatgatgcagatgcgtcagatcgccggtatg
cgcggtctggtgtcgaacgcgaagaacgagaccatcccgcggcccatcaaggcgtcgttc
cgtgagggtctctccgtgctggagtacttcatctccacgcacggtgcccgtaagggtctc
gccgacaccgccctgcgtaccgcggactcgggttacctcacccgtcgtctggtcgacgtc
tcccaggacgtgatcatccgcgaggaggactgcggcaccgagcgcggcctcaagctgtcg
atcgcctccaagggcgccgacggcgtgctgcgcaaggcggaggacgccgagaccagcgtg
tacgcgcgctgcctcgccgaggacatcgtcgtcgacggcatggtgctggccccggccggc
accgacctgggcgacgtgctcatcgacgagctggtcaggcacggtgtggagaccgtcaag
acgcggtccatcctcacctgcgagtcccaggtgggcacctgtgccatgtgctacggccgc
tcgctggccaccggcaagctggtggacatcggcgaggccgtcggcatcatcgcggcccag
tcgatcggtgagcccggcacccagctgacgatgcgtaccttccacaccggtggtgtggcg
ggtgacgacatcacgcagggtctgccgcgtgtcgtcgagctgttcgaggcccgtacgccc
aagggcgtggcgccgatctccgagtcggcgggccgctgccgcatcgaggagacggagaag
accaagaaggtcgtcgtcaccccggacgacggctcggacgagacctcctacagcgtctcc
aagcgcgcccgtctgctggtgggcgagggcgaccacgtctcggtcggccagaagctgacc
gtcggtacggagaacccgcacgacgtgctccgtatcctcggccagcgcgcggtgcaggtg
cacctggtgggcgaggtccagaaggtctacaactcgcagggtgtgtcgatccacgacaag
cacatcgagatcatcatccggcagatgctccgccgtgtgacgatcatcgagtccggcgac
gccgagctgctgcccggcgagctggtggagcgcaccaagttcgagggcgagaaccggcgc
gtggtccaggagggcggctccccggcctccggacgtccgcagctgatgggcatcaccaag
gcctcgctggccacggagtcctggctgtcggcggcgtccttccaggagacgaccagggtt
ttgaccgacgcggcgatcaacgccaagtcggactccctgatcggcctcaaggagaacgtc
atcatcggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatccgggtc
gagccgaccgaggaggcgaaggccgcgatgtactcggccgtcggttacgacgacatcgac
tactcgcccttcggcacgggctccggccaggcggttccgctggaggactacgactacggt
ccgtacaacgcgtaa
DBGET
integrated database retrieval system
