Streptomyces tubbatahanensis: MMF93_22930
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Entry
MMF93_22930 CDS
T08938
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stub
Streptomyces tubbatahanensis
Pathway
stub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMF93_22930 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stub03021
]
MMF93_22930 (rho)
03019 Messenger RNA biogenesis [BR:
stub03019
]
MMF93_22930 (rho)
Transcription machinery [BR:
stub03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MMF93_22930 (rho)
Messenger RNA biogenesis [BR:
stub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MMF93_22930 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
Spore_III_AA
NACHT
AAA
VAD1-2
Motif
Other DBs
NCBI-ProteinID:
UNS98990
UniProt:
A0ABY3XXB0
LinkDB
All DBs
Position
5296283..5298364
Genome browser
AA seq
693 aa
AA seq
DB search
MSDTTDLMGVNADTAADGAAAPAATDASAAPAASGAAPRRRRSGTGLEGMVLAELQQVAS
SLGIRGTARMRKSQLIEVIKERQAGGSSQGASEPDGKSAKPADSKDSKEGKAAKPAGDQA
AKDAKSPEGGEPAAEQKPKRRATSRTRTGDAEAAQQPQGGQQQIDIPGQTEGDAKAAQEG
GRARRAKGDSADAAEGRGDAKSSGDSGRQDGKDARAERPDKDGGKGGPSGDGKQQQDRPS
KRDRQRDRDRDRNRGKNDGGNQQNQSGGGGGGGRRDEAFDDDGGGGRRGRRGRYRDRRGR
RGGREDFEPQIAEDDVLIPVAGILDILDNYAFVRTSGYLPGPNDVYVSLAQVRKNGLRKG
DHVTGAVRQPREGERREKFNALVRLDSVNGMSPEDGKGRSEFNKLTPLYPQERLRLETEP
NQLTSRIIDLVSPVGKGQRGLIVAPPKAGKTTVLQSIANSITRNNPECHLMVVLVDERPE
EVTDMQRSVKGEVISSTFDRPAEDHTTIAELAIERAKRLVELGHDVVILLDNITRLARAY
NLAAPASGRILSGGVDSTALYPPKKFFGAARNIEDGGSLTILAAALVETGSRMEEVIFEE
FKGTGNMELKLDRKLAEKRIFPAVDVDQSGTRKEEILMANEELQIVWKLRRVLHALDQQQ
AIELLLDKMKQTKSNAEFLLQIQKTTPTPNGQD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgaacgccgataccgcagccgacggtgccgcg
gcgcccgccgctacggacgcttccgccgcgcctgcggcctccggtgccgcacccaggcgt
cggcgctccggcacggggctcgagggcatggtgctggccgagctccagcaggtcgcctcc
agcctcggcatcaggggcaccgcccggatgcgcaagagccagctgatcgaggtcatcaag
gagcgccaggcgggcggcagttcgcaaggcgcctccgagccggacggcaagagcgccaag
cccgccgacagcaaggacagcaaggagggcaaggccgccaagcccgccggggaccaggcg
gccaaggacgccaagtcccccgagggcggcgagccggccgccgagcagaagccgaagcgc
cgcgcaacctcgcggacccgtacgggcgatgccgaggccgcgcagcagccgcagggcggt
cagcagcagatcgacatccccgggcagaccgagggcgatgccaaggcggcccaggagggc
ggccgggcgcgccgcgccaagggcgactccgcggacgccgccgagggccgcggcgacgcc
aagtccagcggtgacagcggccggcaggacggcaaggacgccagggccgagcggcccgac
aaggacggcggcaagggcggcccctccggcgacggcaagcagcagcaggaccgcccctcc
aagcgggaccgccagcgtgaccgcgaccgcgaccgcaaccgcggcaagaacgacggcggc
aaccagcagaaccagtcgggtggcggtggcggtggcggccgccgggacgaggccttcgac
gacgacggcggcggtggccgccgcgggcgccggggccgctaccgcgaccgcaggggccgt
cgcggcggccgtgaggacttcgagccgcagatcgccgaggacgacgtcctgatcccggtc
gccggcatcctcgacatcctcgacaactacgcgttcgtgcgcacctccggctacctgccg
ggcccgaacgacgtgtacgtctcgctcgcccaggtccgcaagaacggcctgcgcaagggc
gaccacgtcaccggtgcggtgcggcagccgcgtgagggggagcggcgcgagaagttcaac
gcgctggtccgtctcgactcggtcaacgggatgtcgcccgaggacggcaagggccgctcg
gagttcaacaagctgaccccgctctacccgcaggagcggctgcgtctggagacggagccg
aaccagctcacctcgcggatcatcgacctggtctcgccggtcggcaagggccagcgcggt
ctgatcgtggccccgccgaaggcgggcaagacgacggtgctgcagtcgatcgcgaactcg
atcacgcggaacaaccccgagtgccacctgatggtcgtcctggtggacgagcgtcccgaa
gaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcctcgaccttcgaccgc
ccggccgaggaccacaccaccatcgccgagctggccatcgagcgtgccaagcggctggtg
gagctgggccacgacgtggtgatcctgctggacaacatcacccgcctcgcccgcgcctac
aacctggcggcgccggcctcgggccgcatcctgtccggtggtgtggactccacggcgctg
tacccgccgaagaagttcttcggcgcggcgcgcaacatcgaggacggcggctccctgacg
atcctcgcggcggcgctggtggagaccggctcccgcatggaggaggtcatcttcgaggag
ttcaagggcaccggcaacatggagctcaagctcgaccggaagctcgccgagaagcggatc
ttccccgcggtggacgtggaccagtccggtacccgcaaggaggagatcctcatggcgaac
gaggagctccagatcgtctggaagctgcggcgcgtgctgcacgcgctggaccagcagcag
gccatcgagctgctgctggacaagatgaagcagacgaagtccaacgcggagttcctgctc
cagatccagaagacgactccgacgcccaacggccaggactga
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