Streptomyces tubbatahanensis: MMF93_24945
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Entry
MMF93_24945 CDS
T08938
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stub
Streptomyces tubbatahanensis
Pathway
stub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMF93_24945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stub03019
]
MMF93_24945
Messenger RNA biogenesis [BR:
stub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMF93_24945
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
UNS99344
UniProt:
A0ABY3XXT9
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All DBs
Position
5761386..5763071
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AA seq
561 aa
AA seq
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MSHPHPELGPPPQLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDIDGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVEEGHRERIGPFDCEFLAVNHSIPDALAVAVRTPAGMVVHTGDFKMDQLP
LDGRLTDLRAFARLGEEGIDLLLSDSTNAEVPGFVPPEREISSVLRQVFSSAQKRIIVAS
FASHVHRIQQILDAAHEHGRRVAFVGRSMVRNMGIARDLGYLNVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFFNICRPRNLMPVHGEWRHLRASAELGAATGVPQD
RIVIAEDGVVVDLVDGKAKITGKVQAGYVYVDGLSVGDVTESSLKDRRILGDEGIISIFV
VVDSTTGKIVGGPHIQSRGSGIDDTDFAAVMPKIDEALAKSAQDGIAETHQLQQLVRRTV
GKWVSDSYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggtccgcctccgcagctccccaagggcggcctccgc
gtcacccccctgggcggcctcggcgagatcggccgcaacatgaccgtcttcgaatacggc
ggcaggctcctgatcgtcgactgcggcgtcctcttccccgaggaggagcagcccggcatc
gacctgatccttcccgacttcaccacgatcagggaccgcctcgacgacatcgacggcatc
gtcctcacccacgggcacgaggaccacatcggcggtgtcccctatctcctccgcgagaag
ccggacatccccctgatcggctccaagctcaccctcgccctcatcgaggccaagctccag
gagcaccgcatccggccctacacgctggaagtggaggaaggccaccgcgaacgcatcggc
cccttcgactgcgagttcctcgccgtcaaccactccatccccgacgccctcgccgtcgcc
gtgcgcaccccggcaggcatggtcgtgcacaccggcgacttcaagatggaccagctcccg
ctggacggccgcctcaccgacctgcgggccttcgcgcgcctcggcgaagagggcatcgac
ctgctgctcagcgactcgaccaacgccgaggtccccggcttcgtcccgcccgagcgcgag
atctcctcggtgctgcgccaggtcttctccagcgcgcagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatccttgacgccgcacacgagcacggccgc
cgcgtcgccttcgtgggccgctccatggtccgcaacatgggcatcgcccgcgacctgggc
tacctcaacgtccccgccggactcgtcgtggacgtcaagactctcgacgatctgcccgac
gacgaggtcgtcctggtctgcaccggctcccagggcgagcccatggcggccctctcccgg
atggccaaccgcgatcaccagatccgcatcgtccagggcgacaccgtgatcctcgcgtcg
tccctcatcccgggcaacgagaacgccgtctaccgcgtcatcaacggcctcacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctccgcg
ggcgagctgctgtacttcttcaacatctgccggccgcgcaacctgatgcccgtccacgga
gagtggcggcacctgcgcgccagcgccgaactgggcgcggccaccggcgtcccccaggac
cgcatcgtgatcgccgaggacggcgtcgtggtggacctggtcgacggcaaggccaagatc
accggcaaggtccaggccggctacgtgtacgtcgacggcctctcggtcggtgacgtcacc
gagtcctctctcaaggaccgccggatcctcggggacgaaggcatcatctccatcttcgtc
gtggtcgacagcaccacagggaagatcgtcggcggcccccacatccagtcccgcggctcc
gggatcgacgacaccgacttcgccgccgtcatgccgaagatcgacgaggccctcgccaag
tccgcccaggacggcatcgcggagacccaccagctccagcagctggtgcgccgcacggtg
ggcaagtgggtctcggacagctaccgtcggcgcccgatgatcctgcccgtggtcgtcgag
gtctga
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