Streptomyces tubbatahanensis: MMF93_25255
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Entry
MMF93_25255 CDS
T08938
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stub
Streptomyces tubbatahanensis
Pathway
stub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMF93_25255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stub03019
]
MMF93_25255
03400 DNA repair and recombination proteins [BR:
stub03400
]
MMF93_25255
Enzymes [BR:
stub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMF93_25255
Messenger RNA biogenesis [BR:
stub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMF93_25255
DNA repair and recombination proteins [BR:
stub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MMF93_25255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
UNT01259
LinkDB
All DBs
Position
complement(5847418..5849607)
Genome browser
AA seq
729 aa
AA seq
DB search
MSDTQLRRDADVVLADLVGDKEGTARLRPDQWRAIEALVAERKRALVVQRTGWGKSAVYF
VATALLRKQGSGPTVIVSPLLALMRNQVEAAARAGIRARTINSSNPEEWQAIESEVGLGE
VDVLLVSPERLNNPDFRDNVLPSLTASTGLLVVDEAHCISDWGHDFRPDYRRLRTMLAEL
PSGVPVLATTATANARVTADVAEQLGTGGAGGDGGMSAGSAPALVLRGPLDRESLSLSVL
RLPDASHRLAWLGEHLPSLPGSGIIYTLTVAAAEEVTAFLRQCGHEVASYTGRTENADRE
AAEADLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEV
LLLPGQEDEAIWRYFASLAFPAEEQVRRTLDVLTASDGPMSLPALEPRVELRRSRLEMML
KVLDVDGAVRRVKGGWVATGAPWQYDTDRYQWVERQRLAEQRAMRGYAATTDCRMEFLRR
ELDDDKAAPCGRCDNCAGARFSATVDEASVVAAKGELRRPGVRIDPRRMWPTGMPSVGMD
LKGRIPAQQQAAPGRALGRLSDIGWGNRLRPLLAEQAGDGPVPDDVLQGAVTVLADWAKA
PGGWATEGPEALERPAGIVAIGSRTRPQLVRSFAERIADIGRMPLLGEVACADEFGLFNG
PRSNGAQRLRAVHDTLTMPPELAASMAAVDGPVLLIDDYTDTGWTITVAARMLREAGAKE
VLPLVLAAQ
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagctgcgacgagacgccgacgtggtgctggccgacctcgtcggtgac
aaagaaggcacggccagactgcgcccggaccagtggcgggccatcgaggcactcgtggcg
gagcgtaagcgcgcactggtggtacagcgcaccggctggggcaagtcagccgtgtacttc
gtggcgacggctctcctgcgcaaacagggatcgggaccaacggtgatcgtctcccccctg
ctggccctgatgcgcaaccaggtggaggcagccgcgcgagccggtatccgcgcccgcacc
atcaactcgtcgaatcccgaggagtggcaggcgatcgagtcggaagtgggcctcggagag
gtcgacgtactgctggtcagccctgagcgactcaacaatcccgatttccgggacaacgtg
cttccgagcctgaccgcttccaccggactcctggtcgtggacgaagcacactgcatctcc
gactggggccacgacttccgtcccgactaccgcaggctgcgcaccatgctcgccgagttg
ccatccggcgttccggtgctcgcgacgaccgccacggccaacgcacgcgtcacggctgat
gtggccgagcagctcggcacgggcggcgcgggtggggacggaggcatgtccgccggctcc
gcgcccgcactggtgcttcgcggaccgctcgaccgggagagcctgagcctgagcgtgctg
cgcttgccggacgcttcgcatcggctcgcctggctgggagagcacctcccctccctgccg
ggctcgggcatcatctacaccctgacggtggccgcggccgaggaggtcacggccttcctg
cgccagtgcggacacgaggttgcctcctacacgggcaggacggagaacgcggatcgcgaa
gccgctgaggcagacctcctggccaaccgtgtgaaggccttggtcgcgacgtcggccctg
ggcatgggcttcgacaaacccgacctcggcttcgtcgtccatctcggttcgccttcctcc
cccatcgcctactaccagcaggtgggccgcgccggccgcggcgtggaacacgcggaggtt
ctcctgctgccagggcaggaggacgaagcgatctggcggtacttcgcctcgctcgccttt
cctgccgaggaacaggtgcggcgcacgctcgacgtgctcactgcgtcagacggcccgatg
tccttgcccgctctggagccccgcgtcgagctccgcaggtcacggctggagatgatgctg
aaggttctcgatgtcgacggtgccgtccggcgagtcaaaggcggctgggtagccactggg
gcaccgtggcagtacgacaccgaccggtaccagtgggtggagcgccagcggctggccgag
cagcgcgcgatgcgcggctatgccgccaccaccgactgccggatggagttcttgcgcagg
gaactggacgacgacaaggccgctccctgcggcagatgcgacaactgcgccggtgcccgg
ttcagcgcgacggtcgatgaggcctcggtcgtggccgccaagggtgagctacggaggccg
ggggtacgaatcgacccacgccggatgtggccgaccggcatgccgtcggtcggcatggat
ctcaagggccgcatccccgcgcagcagcaagcggcacccgggcgggcgctcggacggctc
tccgacatcggctggggaaacaggctgcgcccactgctggccgagcaggcgggagacggc
ccggtacccgacgacgtgctgcagggtgcggtgacggtgcttgcggactgggcgaaggca
ccaggtggctgggcgacagagggaccggaagcgttggagcgtcctgcggggatcgtcgcc
atcgggtcccggacccgaccacagcttgtgcggtcgttcgcggaacggatcgccgacatc
ggccgcatgccacttctgggagaggtggcctgcgctgacgagttcggcctgttcaacggc
ccccgaagcaacggagcccagcgcctgcgtgcggtgcatgacacgctcacgatgccgccg
gagctggccgcgtccatggctgccgtggacggtccggtgcttctgatcgacgactacacc
gacaccggctggacgatcaccgtggcagcccgaatgctccgggaggccggcgcgaaggag
gtgctgccactggttctggcggcgcagtga
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