Schaalia turicensis: G5S47_04110
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Entry
G5S47_04110 CDS
T07393
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stuc
Schaalia turicensis
Pathway
stuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S47_04110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stuc03019
]
G5S47_04110
03009 Ribosome biogenesis [BR:
stuc03009
]
G5S47_04110
Enzymes [BR:
stuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5S47_04110
Messenger RNA biogenesis [BR:
stuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5S47_04110
Ribosome biogenesis [BR:
stuc03009
]
Prokaryotic type
rRNA helicases
G5S47_04110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QYB16940
LinkDB
All DBs
Position
complement(964612..966768)
Genome browser
AA seq
718 aa
AA seq
DB search
MDLESGLVDDELENAEDGGEREDDEEEPSITFADLGLPDEILDAVTQMGFVTPTPIQEKA
IPSLLELNDVVGIAQTGTGKTAAFGLPMLAIVDADEKLVQSLVLAPTRELAMQSAQAIED
FAARTRGLEVVSVYGGSPYGPQINALKKGAQVVVGTPGRVIDLIEKGALDLSGVRMLVLD
EADEMLRMGFAEDVETITSSVPKDRLTALFSATMPQAIERIANTHLFNPVKIAVSEESST
VDTIHQTYAVVPFKHKIGALSRVLATRAQHIAAGQEDADAAIVFVRTRADVEEVSLEMSA
RGFRAAGISGDVAQTERERMVARLRAGTLDVLIATDVAARGLDVERISLVVNFDVPREPE
AYVHRIGRTGRAGREGRSLTFFTPREHGRLRRIEKLTGTPMEEIQIPSPAAVSEFRSRRM
LEGLNARIERGRLEMYKNLLTEVQETSETDIMDIAAALMANAVGDEGPAPRVEKDRRGKG
KIRNEEEIDESGEFVGASFEGGRDKDRPLKPGHQRGRGRKASFGVGTRYRVEVGKKDRVK
PGSIVGAIAGEGGVDGRDIGNIEIFPTFSLVEISGDLTDDQLRRIGKGYVQGRPLRIRVD
QGPGKGGHRSDRERSFDKAKKFDRSGRPERDRDEREYARRYERDDKPRRAHKDRNDRFDH
HAHHESSDRRSSLRAAKRSGSSDRFRASGRGKSSDRFDRGGKSGSKGTRSFGSHRHSR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
ctggacttagaatccggcctcgtcgatgatgaactcgagaacgccgaagatggcggcgaa
cgtgaagacgacgaagaagagccttccatcacctttgctgaccttggtcttcccgatgag
atcctcgatgctgtcacccagatggggtttgtgacaccgactccaattcaggaaaaggcg
atcccgtccctgctcgaattgaatgacgttgtcggtatcgcccagaccggtaccggtaag
accgccgctttcggtctgcctatgctcgcgatcgtggatgccgatgagaagctcgtccag
tccctcgtgcttgctccaacccgcgaacttgccatgcagtccgcgcaggccattgaggat
ttcgcagcccgtacacgtggccttgaggttgtttccgtctacggtggttcaccctatggc
ccgcagatcaacgctctgaagaagggagcgcaggtcgtcgtcggcacccctgggcgtgtc
atcgaccttattgaaaaaggtgcgctagatctgtccggcgtgcgcatgctcgtcctcgac
gaggccgacgaaatgctacgcatgggcttcgctgaagacgtcgaaacgattacctcgtcc
gtgcctaaagaccgcctgaccgcactgttttccgccacgatgccccaggcgattgaacgc
attgcgaacactcacctgtttaaccccgtgaagatcgctgtctcggaagaatcttcgact
gttgacacgatccaccagacctacgctgtcgtgccgttcaagcacaagatcggcgccttg
tctcgcgtgctcgcgacgcgtgcccagcacatcgctgccggccaggaagacgccgatgct
gcgattgtgttcgtgcgtacccgcgccgacgttgaagaggtttccctcgaaatgtcagca
cgaggtttccgcgcagccggtatctccggtgacgtcgcgcagactgagcgtgaacgcatg
gttgcacgtctgcgtgccggcacgctcgacgtgctgatcgcaaccgacgttgcggcccgt
ggcctcgacgttgagcgcatctcacttgtcgtgaacttcgatgttccccgtgaaccggaa
gcctacgtgcaccgcatcggtcgtaccggtcgcgccggccgcgaaggtcgctcgcttact
ttctttactccacgtgaacacggtcgcctgcgccgcatcgagaagctgaccggcaccccg
atggaagagatccagattccgtcgcccgcagcagtctctgagttccgttcgcgtcgcatg
ctcgaaggcctcaacgctcgcatcgaacgcggtcgtcttgaaatgtacaagaacctgctg
accgaggttcaagaaacgtctgaaaccgacattatggacatcgctgccgcgctcatggcg
aacgctgttggtgacgagggtccggctccgcgcgttgaaaaggatcgccgtggcaagggc
aagatccgtaacgaagaagaaattgacgagtccggagaattcgttggtgcttcattcgag
ggcggtcgtgataaggaccgtccgctgaagccaggccaccaacgcggtcgtggtcgcaag
gcatcctttggtgtcggtacccgataccgcgttgaggttggcaagaaagaccgcgtgaag
cccggttcgattgtcggagcgattgctggtgaaggtggcgttgacggccgcgacattggc
aatattgaaatctttccgaccttctcgctggtcgaaatctccggcgacctgaccgacgat
cagttgcgccgcattggcaagggctacgttcagggccgtccgctgcgcatccgcgtggac
cagggccccggtaagggcgggcaccgctctgaccgcgaacgtagcttcgacaaggctaag
aagttcgatcgttcgggacgccccgaacgcgaccgtgacgaacgcgaatatgcgcgtcgt
tacgaacgcgatgacaagccacgtcgtgcgcacaaggaccgcaacgaccgctttgatcat
catgcgcaccacgagtcgtccgaccgtcgctcatcgctacgtgccgcgaagcgttccggc
tcttctgatcgttttcgcgcgagtggccgtggcaagtcctccgatcgtttcgaccgcggt
ggcaagtcaggttcaaagggcacgaggtcctttggttctcaccgtcactcacgctga
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