Schaalia turicensis: G5S47_06495
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Entry
G5S47_06495 CDS
T07393
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stuc
Schaalia turicensis
Pathway
stuc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stuc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S47_06495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stuc03021
]
G5S47_06495
03400 DNA repair and recombination proteins [BR:
stuc03400
]
G5S47_06495
Enzymes [BR:
stuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S47_06495
Transcription machinery [BR:
stuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S47_06495
DNA repair and recombination proteins [BR:
stuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S47_06495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QYB16975
LinkDB
All DBs
Position
complement(1462828..1466724)
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDAKTFDSLKITLATSDDIASWSHGEVKKPETINYRTLKPERDGLFGEQIFGPTRDWEC
ACGKYKRVRYKGIVCEKCGVEVTRSKVRRERMGHIDLAAPVTHIWYFKGVPSRLGYVLNL
APKDLEKVIYFAAYMVTEIDEKGRDEDLMDLRAELEVQKTQMEDRRDDAINQAAEKLEAD
LAALEADGASAAEREKLRKSAEKDMARLRKRFDGDIDGLEVVWDNFTNLKVGALIGDERL
YRAMVARYGTYFKGDMGAAAIQKRLETFDLEAEVESLRQTIASDSGPRKARAIKRLKVIN
AFIATGNSPASMVLTKIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNTRLKRLLEL
GAPDVIVANEKRMLQESVDALFDNGRRGRPVAGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVEKNYAQNVKAAKRKVERQR
PEVWDVLDDVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLACGAFNADFDGDQ
MAVHLPLGAEAQAEARILMLSTNNILKPSDGRPVAMPSQDMIIGLFHLTSEPDSTIEVAK
DSAGNPIVPSFSSAAEAIMAFDMGLLDLNAKALIRFDGIVPPADWEAPEGWEPGDDVLLE
TSLGRAIFNEQLPVDYPFVNEVVGKKQLGQIVNTLTQRYPNVLVAECLDALKSAGFHWST
WSGITIAFSDIQASPRKEEILAEYEARAAKIQEDFDAGFILEENRYKDLVDLWLECTQKV
ADDMRGNFDDRNTVYRMVNSGARGNWSQVQQIAGMRGLVSDPKQKLIERPIKANYREGLT
VLEYFIATHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTRQGVKIKIAKKV
DGVWEALETVETTAYARNLARDAVNEAGEVVMPAGTDLGDDELIALAQAGVEEITCRSVL
TCESQVGTCAACYGRSLATGKQVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAASAADI
TQGLPRVQELFEARSPKMEAKMSEAAGRVHIDDEDPSVRRIIITRDDAKEDDVIEVSRRQ
ELLVSEGEHVEAGKPLTEGQLDPKEIVRIMGRSVAQKQLVDEVQKVYRDQGVGIHAKHIE
VIVRQMLRRITILEPGDTTFMPGELVDRMAYLAQNRKVAAEGGQPASGRQMLMGITKASL
ATDSWLSAASFQETTKVLTEAAMNGKSDSLVGLKENVILGKLIPAGTGLSRYNRVTVEPT
AEALAASNYTQMDFQDGGVSEDFLDALGAIDFGMSFRE
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgccaaaacgttcgacagcctgaagatcaccctggccacaagcgatgacatc
gcttcgtggtcacacggtgaagtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgcgacggcctgttcggtgaacagatcttcggccccacacgcgactgggaatgc
gcgtgtggcaagtacaagcgtgtccgttacaagggcatcgtgtgtgaaaagtgtggcgtc
gaggtcacgcgctctaaggttcgccgcgagcgcatgggccacatcgacctcgccgcaccg
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcggttacgtgctgaacctc
gctccgaaggacctcgaaaaggtcatttacttcgccgcatacatggtcaccgaaatcgac
gaaaagggccgcgacgaggacctcatggatctgcgcgctgaactcgaagttcagaagacg
cagatggaagaccgccgtgacgacgccatcaaccaggcagccgagaagctcgaagctgac
ctcgctgctctcgaagctgatggcgcctccgccgcggaacgcgaaaagctccgcaagagc
gccgagaaggacatggcgcgccttcgtaagcgcttcgacggtgacatcgacggtcttgag
gtcgtgtgggataatttcacgaacctgaaggtcggtgccctgatcggtgacgagcgcctc
taccgcgcgatggtcgcccgctacggcacctacttcaagggcgacatgggcgcagctgcc
atccagaagcgcctggaaaccttcgatcttgaagccgaagttgaatccctccgtcagacc
attgcgtccgactccgggcctcgtaaagcacgtgccatcaagcgcctgaaggtcatcaac
gccttcatcgcgaccggcaactcgccggcatcgatggtcctgaccaagattccggttatt
ccgccggacctgcgtccgatggttcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgagtgatcaaccgcaacacccgactcaagcgactgcttgaactg
ggtgcgccggacgtcatcgtcgcgaacgaaaagcgcatgctgcaggaatctgtggacgcg
ctcttcgacaacggccgccgtggtcgccccgttgcaggcccgggcaaccgcccgctgaag
tcgatctctgacatgctcaagggcaagcagggtcgcttccgtcagaacctgctcggtaag
cgcgttgactactctggccgttcggtcattgtcgtcggcccgcagctgaagctccaccag
tgtggtctgcccaagcagatggcactcgagctcttcaagcccttcgtcatgaagcgcctc
gttgagaagaactacgcgcagaacgtcaaggcagcgaagcgcaaggtcgagcgtcagcgc
cccgaggtgtgggacgtcctcgacgacgttatccgcgagcaccccgtgctactgaaccgt
gcacctacccttcaccgtctgggtatccaggcgttcgagcctcagctcattgaaggtaag
gccattcagctgcacccgctcgcctgtggcgcgttcaacgctgacttcgacggtgaccag
atggcagtccacctgccactgggtgccgaggctcaggctgaagcgcgtatcctcatgctg
tcgacgaacaacattctgaagccgtccgacggtcgccccgttgcgatgccgtcacaggac
atgatcattggcctgttccacctgacttcggaaccggattcgacgatcgaagttgccaag
gattctgccggcaaccccatcgttccgtcgttctccagtgccgctgaagcgattatggcg
ttcgacatgggtctgcttgacctcaacgcgaaggctctcattcgcttcgacggcatcgtt
ccgccggccgattgggaagcacctgaaggttgggaaccgggcgacgatgttctgctcgaa
accagcctcggtcgcgcaatcttcaacgagcagctaccggttgactacccgttcgtgaac
gaggtcgtcggcaagaagcagctcggtcagatcgtcaacaccctgacccagcgttacccg
aacgttctggttgcagaatgcctcgatgccctgaagtcggccggcttccactggtcgacg
tggtcgggtatcacgatcgcgttctccgacatccaggcgtcgccacgcaaggaagaaatt
cttgctgaatacgaggctcgcgcagccaagattcaggaagacttcgacgcaggcttcatc
ctcgaagaaaaccgttacaaggacctcgttgacctttggctcgaatgcacccagaaggtt
gcagatgacatgcgcggtaacttcgacgatcgcaacaccgtgtaccgcatggtcaactcg
ggcgcgcgtggtaactggtcgcaggtccagcagatcgcaggtatgcgtggtctggtgtcc
gacccgaagcagaagctcattgagcgtccgatcaaggcgaactaccgcgaaggcttgacc
gttctcgagtacttcatcgcaacgcacggtgctcgtaagggtcttgctgatacggcactt
cgtaccgcagagtctggctacctgactcgtcgtctggttgacgtctcgcaggacgtcatc
gttcgtgaagaggattgtggcacccgccagggcgtcaagatcaagatcgcgaagaaggtc
gacggcgtttgggaggctctcgaaacggttgagaccaccgcatatgcgcgtaaccttgcc
cgcgatgctgtgaacgaagccggcgaggtcgtcatgcccgcaggcaccgatcttggtgac
gatgagctcatcgcacttgcgcaagcaggcgttgaagagatcacctgccgttccgtcctc
acctgtgaatcgcaggtcggcacctgtgctgcctgctacggtcgctcgttggctaccggc
aagcaggttgatattggtgaagcagttggcattatcgccgctcagtcgattggtgagccc
ggtactcagctcacgatgcgtacgttccacaccggtggcgccgcatctgcagctgatatt
acccagggtctgccacgcgttcaggaactcttcgaggctcgtagtccgaagatggaagca
aagatgagcgaggccgctggtcgcgttcacattgatgacgaggatccgtcggttcgtcgc
atcatcatcactcgtgatgacgcgaaggaagatgacgttattgaggtctcgcgtcgtcag
gagcttcttgtttctgaaggcgagcatgtcgaggcaggtaagcctctgactgaggggcag
cttgatccgaaggaaatcgttcgcatcatggggcgctccgtcgcgcagaagcagcttgtt
gacgaggtccagaaggtctaccgcgatcagggcgtcggtatccacgcgaagcacattgag
gtcatcgttcgccagatgttgcgtcgaattaccatccttgagcccggtgatacgactttc
atgcccggcgagcttgttgaccgtatggcttacctggcgcagaaccgcaaggtcgctgcc
gagggcgggcaacctgcttccggtcgtcagatgcttatgggtatcacgaaggcgtcgctg
gcaaccgactcgtggctgtcggcggcatccttccaggagacgacgaaggttctcactgag
gcagcgatgaacggcaagtctgattcgctcgttggcctgaaggagaacgttattctcggt
aagctcatcccggctggtaccggcttgtcgcgttacaaccgagtcaccgttgagccgact
gcggaagcgcttgctgcttcgaactacacgcagatggacttccaggatggtggagtttcc
gaggacttcctcgatgctcttggtgcgatcgacttcggtatgtcgttccgtgagtag
DBGET
integrated database retrieval system
