Streptomyces tubercidicus: STRTU_000348
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Entry
STRTU_000348 CDS
T09099
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
stud
Streptomyces tubercidicus
Pathway
stud03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STRTU_000348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stud03000
]
STRTU_000348
03400 DNA repair and recombination proteins [BR:
stud03400
]
STRTU_000348
Enzymes [BR:
stud01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
STRTU_000348
Transcription factors [BR:
stud03000
]
Prokaryotic type
Helix-turn-helix
AraC family
STRTU_000348
DNA repair and recombination proteins [BR:
stud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
STRTU_000348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
WAU10276
LinkDB
All DBs
Position
complement(398052..399572)
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AA seq
506 aa
AA seq
DB search
MNEDSRYEAVRSRDARFDGAFFFAVSTTGIYCRPSCPATTPRRRNVAFFRTAAAAQGSGF
RACRRCRPDAVPGSPEWNARADVVGRAMRLISEGVVDREGVSGLAARLGYSARQVQRQLT
AELGAGPVALARAQRAHTARVLLQTTGLQAAEIAFAAGFASVRQFNDTIKEIYALTPSEL
RAARPGKATRFGPVASPTTPGVLPLRLAFRGPFAARELFDHLQRRAITGIEEVSGEPGAR
TYRRTLRLPHGAGIAEVDEAAGDGWLDCRLHLAELRDLTTASQRMRRLFDLDADPYAVAE
RLGADAVLARLVDRRPGLRSPGAPAPDELAVRAVLGQQVSVAAGRTLGGALVAAYGEPLP
EPAGALTHLFPRIDDLAQAALTELGMPESRRATLRTLSNALADGTVVLDAGADRDEAERA
LLGLRGIGPWTAGYIRMRALGDPDVLLTGDVAVLAGMRRAGAPAAGLRELAETWRPWRSY
AMHHFWNVPLTEPANPCPTTTESTGP
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaggacagcaggtacgaggcggtgcgcagcagggacgccagattcgacggcgcc
ttcttcttcgcggtgtccacgaccgggatctactgccggccgagctgccccgccaccacg
ccccgccgccgcaatgtcgccttcttccggaccgccgcggccgcccagggctccggattc
cgtgcctgccggcgctgccgccccgatgcggtgcccggctcgccggagtggaatgcccgc
gccgatgtcgtcgggcgggcgatgcggctgatcagcgagggcgtggtcgaccgggagggc
gtctccgggctggcggcccggctcggctacagcgcccggcaggtccagcggcagctgacg
gccgagctgggtgccggcccggtggccctggcgcgggcacagcgcgcccacaccgcccgg
gtcctgctgcagaccaccggactccaggcggccgagatcgccttcgcggcgggcttcgcc
agcgtgcggcagttcaacgacaccatcaaggagatctacgccctcaccccgagcgagctg
cgtgccgcccgccccggtaaggcgactcgttttggcccggtggcgtcgcccaccaccccc
ggggtgctgccgctgcgactggccttccgcggcccgtttgcggcgcgggagctgttcgac
cacctccagcggcgtgcgatcaccgggatcgaggaagtcagcggcgagcccggcgcccgt
acctaccggcgcaccctgcggctgccgcacggggccgggatcgccgaggtcgacgaggcg
gccggcgacggctggctggactgccggctgcacctggccgagctgcgggatctcaccacc
gcgagccagcggatgcgccgcctcttcgacctggacgccgatccgtacgcggtcgccgaa
cggctcggcgcggatgccgtactggcgcggctggtggaccggcggcccggtctgcgctcg
ccaggagcccccgccccggacgagctcgccgtccgtgccgtactcggccagcaggtctcg
gtcgcggccggccgcaccctcggcggtgccctggttgccgcctacggagaaccgctgccc
gaaccggccggtgcgctcacccacctcttcccccgtatcgacgaccttgcgcaggccgcc
ctcaccgaactcgggatgcccgagtcacggcgggcgaccctgcgcacgctcagcaacgca
ctcgccgacggtacggtcgtcctggacgccggagccgaccgggacgaggccgaacgcgcg
ctcctcgggttgcgcggcatcggcccgtggaccgccggatacatccggatgcgagccctg
ggggaccccgatgtcctgctgaccggcgatgtggccgtactggccggcatgcgccgggcc
ggggccccggcggcgggtctgcgggagctggcggaaacctggcggccctggcgctcgtac
gcgatgcaccacttctggaacgtgccgctcacggagccggcgaacccctgccccaccact
acggaaagcaccggaccatga
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