Streptomyces tubercidicus: STRTU_001206
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Entry
STRTU_001206 CDS
T09099
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stud
Streptomyces tubercidicus
Pathway
stud03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
STRTU_001206 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stud03400
]
STRTU_001206 (ligD)
Enzymes [BR:
stud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
STRTU_001206 (ligD)
DNA repair and recombination proteins [BR:
stud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
STRTU_001206 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
WAU11047
LinkDB
All DBs
Position
1422890..1423861
Genome browser
AA seq
323 aa
AA seq
DB search
MAPSAERGSASYPVIRPMLATIGPLPAEHEEAGWAFEAKWDGARCVINTSGDGTVRLITR
AGNDATATYPELAPLGEQLRGRPAVLDGEVVVLDARGRPDFGLLQRRMGVVNPRRTARLA
MEHPVHLVLFDLMYLGGSLLGSPYYERRSLLSGLRLRGPNWSAPEYVEGHAQQVWEGSLQ
AGLEGVVAKRLTSAYLPGVRSPEWRKTKHLLTLDVIIGGWTEGHGGLAGLPGSVLAGVAE
PAGLRYVGSVGSGLSDRERHELARYLEVIPLDRSPFLNAVDVAGAHWAEPRLVAEITLTG
WTSAGRLRHPVWHRLRPDLTHLG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggccccgtccgccgagcgtggctcggcctcgtacccggtgatccggccgatgctggcc
acgatcggcccgctgcccgccgagcacgaggaggcgggctgggcgttcgaggccaaatgg
gacggtgcgcgctgtgtcatcaacacctccggcgacggcaccgtccggctgatcacccgg
gcgggcaacgacgcgaccgccacctacccggagctggcgcccctgggcgagcagctgcgg
ggccggccggcggtgctcgacggtgaggtggtggtgctggacgcgcgcggccggccggac
ttcgggctgctgcagcgccggatgggtgtggtgaacccgcgccgcacggcccggctggcc
atggagcaccccgtacacctcgtgctcttcgacctgatgtatctgggcggctcgctgctc
ggctcgccgtattacgagcgccggtccctgctgtccgggctgcggctccgcgggccgaac
tggtcggcgcccgagtatgtggaaggccatgcccagcaggtgtgggagggctcgttgcag
gccgggctggaaggggtggtggccaagcggctgacctcggcgtatctgccgggtgtgcgg
tcacccgagtggcgcaagacgaagcatctgctgaccctcgacgtgatcatcgggggctgg
acggaaggccatggcggactggccggactccccggttccgtcctggcgggcgtggcggaa
cccgcggggctgcgctacgtcggctcggtcggctcggggctgtccgaccgggagcgccat
gagctggcgcggtacctggaggtgatcccgctcgaccggtcgccgttcctcaacgcggtg
gacgtggcgggggcgcactgggccgagccccggctcgtcgccgagatcacgctcaccggc
tggacctcggccggccggctgcggcacccggtctggcaccggctgcggcccgatctcacc
cacctcggctga
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integrated database retrieval system
