Streptomyces tubercidicus: STRTU_003860
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Entry
STRTU_003860 CDS
T09099
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stud
Streptomyces tubercidicus
Brite
KEGG Orthology (KO) [BR:
stud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stud03016
]
STRTU_003860
Enzymes [BR:
stud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
STRTU_003860
Transfer RNA biogenesis [BR:
stud03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
STRTU_003860
Prokaryotic type
tRNA splicing ligases
STRTU_003860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
SH3_actinomycetes
Motif
Other DBs
NCBI-ProteinID:
WAU13371
LinkDB
All DBs
Position
4437281..4438474
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AA seq
397 aa
AA seq
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MSYVEVPGAQVPIRMWTDPATVEDVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSKIEQAIPVGRGMHGDPVDPG
RIHGFPTARWDDFWARFDGVAEAVKFRQERATKQMGSLGSGNHFIEFCLDDDGVVWLMLH
SGSRNIGKELAEFHMGQAQKLPHNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYARHNR
AVMMGLFQDVVRKEFKKAKVTFDEVISCHHNYVAEEQYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRRMSRNAAKKRFSTQDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIEQQRDLVQVVAHLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaggtgcccggtgcccaggtgccgatccggatgtggacggacccggcc
acggtcgaggacgtcgcgatgcagcagctgcggaatgtcgccacgctgccgtggatcaag
ggtctggccgtgatgccggatgtccactacggcaagggcgccacggtcggctcggtgatc
gccatgcgcggcgcggtctgcccggcggcggtcggggtcgacatcggctgcgggatgagc
gcggtgcggacctcgctcaccgccaatgacctgcccggggacctctcccggctgcgctcg
aagatcgagcaggcgattccggtgggccgcgggatgcatggcgacccggtggacccgggg
cggatccacggcttcccgacggcccggtgggacgacttctgggcgcggttcgacggggtc
gccgaagcggtcaagttccgtcaggagcgggccacgaagcagatggggtcgctcggctcg
ggcaaccacttcattgagttctgcctcgatgacgacggtgtggtgtggctgatgctgcac
tccggctcccgcaacatcggcaaggaactggccgaattccacatgggccaggcccagaaa
ctgccccacaaccagggcctggtcgaccgtgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcccggcacaaccgg
gccgtgatgatgggcctcttccaggacgtcgtccgcaaggagttcaagaaggccaaggtg
accttcgacgaggtgatctcctgccaccacaactatgtggcggaggagcagtacgacggc
atggacctgctggtgacccgtaagggcgcgatccgggcgggcagcggcgaatacggaatc
attccgggctcgatgggcaccggctcctacatcgtcaagggcctgggcaacgccgcgtcc
ttcaactccgcctcacacggcgccggccgccggatgagccgtaacgccgcgaagaagcgg
ttctccacacaggacctggaggagcagacccggggcgtggagtgccgtaaggactccggt
gtggtggacgagatcccgggcgcctacaagccgatcgagaaggtcatcgagcagcagcgg
gacttggtccaggtcgtcgcccatctcaagcaggtcatctgcgtgaagggttga
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