Streptomyces tubercidicus: STRTU_004623
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Entry
STRTU_004623 CDS
T09099
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
stud
Streptomyces tubercidicus
Pathway
stud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
STRTU_004623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stud03400
]
STRTU_004623
Enzymes [BR:
stud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
STRTU_004623
DNA repair and recombination proteins [BR:
stud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STRTU_004623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
AAA_22
Helicase_RecD
PIF1
NPHP3_N
TraI_hel_assoc_N
AAA_16
nSTAND3
PhoH
SLFN-g3_helicase
AAA
UvrD-helicase
HTH_IclR
DEAD
UvrD_C
AAA_5
TrwB_AAD_bind
DAP3
Motif
Other DBs
NCBI-ProteinID:
WAU14049
LinkDB
All DBs
Position
5306234..5308447
Genome browser
AA seq
737 aa
AA seq
DB search
MVNTAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGALLGAQPGESLRMEGRWG
SHPQYGKQFTVENYTTVLPATIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDIIEGE
PGRLVEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGVSTSIAVRIYKKYGDAAISVT
RNEPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKAGLQYALSQSTDQGHCFLPEEQL
ITDAVKLLQVDTGLVIDCLAELAADPEGVVREKVPGGADGAPPVTAVYLVPFHRAEISLA
GRLTRLLRTDEDRMPAFRDVDWGRALAWLARRTGAELAPEQQQAVRLALTEKVAVLTGGP
GCGKSFTVRSVVELARAKKATVVLAAPTGRAAKRLSELTGAEASTVHRLLELKPGGDAAY
DADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLD
GSGPVPAVRLTRIFRQAQQSGVVTNAHRINSGTPPLTSGMADFFLFAEEDAEAAARLTVD
VVARRIPAKFGLDPRRDVQVLSPMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFR
VGDKVTQIRNNYEKGCNGVFNGTVGVVTALDCDEQQLTVRTDEDEEVPYDFDELDELAHA
YAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRKALGQAVRTV
SAGRRCTALDHRLAGAM
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggtcaacacagccgtcgtcgaaggggtcctggagcggatcacctacgccaacgaggag
aacggctatacggtcgcgcgggtcgacacgggccgcggctccggcgatctgctgaccgtc
gtcggcgcgctgctcggcgcgcagccgggggagtcgctgcgcatggagggccgctggggc
tcccacccgcagtacggcaagcagttcactgttgagaactacaccaccgtcctgcccgcg
acgatccagggcatccgccgctatctgggctcgggcctcatcaagggcatcggcccgcgg
atcgcggaccgtatcgtcgagcacttcggcacggacaccctcgacatcatcgagggcgag
cccggccgcctcgtcgaggtaccgggcctgggccccaagcggacgaagctgatcggcgcc
gcctgggaggagcagaaggccatcaaggaggtcatggtcttcctccagggcgtcggggtg
tccacgtccatcgcggtgcggatctacaagaagtacggcgacgccgccatctccgtcacc
cgcaacgagccctaccgcctggccgccgacgtctggggcatcggcttcctgaccgccgac
cgcatcgcccagtccgtgggcattccgcacgacagcccggaccgggtcaaggcgggcctc
cagtacgccctgtcgcagtccaccgaccagggccactgcttcctccccgaggagcaactg
atcaccgacgcggtgaagttgctccaggtggacaccggcctggtcatcgactgcctggcc
gagctggccgccgacccggagggcgtggtccgcgagaaggtgccgggcggtgcggacggt
gcgccgccggtcaccgccgtctatctggtgccgttccaccgtgccgagatctctctggcc
ggccggctgacccggttgctgcgtacggacgaggatcggatgccggcgttccgggacgtc
gactggggcagggcgctggcctggctggcgcggcgtacgggcgccgagctggcccccgag
cagcagcaggcggtgcggctggcgctgacggagaaggtcgcggtgctcaccggcggtccg
ggctgcggcaagtccttcacggtccgctcggtggtcgagctggcgcgcgccaagaaggcc
acggtggtgctggcggcgcccacgggccgggcggccaagcggctctcggagctgacaggg
gcggaggcctccacggtccaccgcctcctggagctcaagccgggcggggacgccgcctat
gacgcggaccggccgctggacgccgatctggtggtcgtcgacgaggcgtccatgctggat
ctgctgctcgcgaacaagctggtcaaggcagtaccgccgggcgcccatctgctcctggtc
ggcgatgtcgaccagctgccgtcggtgggcgcgggcgaggtgctgcgcgacctgctcgac
gggtccggcccagtgccggcggtccggctgaccaggatcttccggcaggcccagcagtcc
ggggtggtcaccaacgcccaccgcatcaactccggcactccgcccctgacgtccggaatg
gcggacttcttcctgttcgccgaggaggacgccgaagcggccgcgcggctgacggtggat
gtcgtggcccgccgcatcccggcgaagttcggcctcgacccgcgccgggacgtccaggtg
ctcagcccgatgcaccgcggcccggccggtgcgggcgccctgaacgggctgcttcagcag
gcggtcacccccgcccgccccgatctgcccgagcgccgcttcggcggccgggtcttccgt
gtcggcgacaaggtcacccagatcaggaacaattatgaaaagggctgtaatggcgtcttc
aacggcacggtcggcgtggtcaccgcactggactgcgacgagcagcaactgaccgtgcgc
acggacgaggacgaggaggttccctacgacttcgacgaactcgatgaactcgcccacgcc
tatgccgtgacgatccatcgttcgcagggtagtgagtatccagcggtggtgattccggtc
accaccagtgcctggatgatgctgcagcgcaatctgctgtataccgcagtgacccgggca
aagcgcttggtggtgctggtcggctcccggaaagccctgggacaggccgtccgcacggtc
tccgccggtcggcggtgtacggcgctcgatcaccggctcgccggtgcgatgtga
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