Streptomyces tuirus: GCM10017668_22490
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Entry
GCM10017668_22490 CDS
T07360
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stui
Streptomyces tuirus
Pathway
stui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017668_22490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stui03019
]
GCM10017668_22490
03009 Ribosome biogenesis [BR:
stui03009
]
GCM10017668_22490
Enzymes [BR:
stui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GCM10017668_22490
Messenger RNA biogenesis [BR:
stui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10017668_22490
Ribosome biogenesis [BR:
stui03009
]
Prokaryotic type
rRNA processing factors
GCM10017668_22490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BCL20406
UniProt:
A0A7G1NFG8
LinkDB
All DBs
Position
complement(2387491..2391705)
Genome browser
AA seq
1404 aa
AA seq
DB search
MLEPTEPTEGSEQNTPSDTLPPRRRRRAASRPAGPPTGATSDAPVETVAPAIPAAEAEDL
AADVVETDEVQEATAEADKAAEPVVSDEAAAPAPPKRRRAVRRASAPAGAPEAAEAAETV
VTATAPVSEAAEAVTPAAEPAEAVTPAASAEGSEDAAPKRTRRRATRTVTSPVTAPAETA
ETVTAPAETAETAAAPAEAAETVADGAAEGAEAAEEAAPRRTRRRASRRASAPAGAPSAA
DAVEGNAEEAKAPVTENPAAEPARASEATASETAAAEPDRAADVPAETAADETAETAEEA
GPRRRRRVVRRAASGFAEPAQPAKGARASKAAARATGDAAESESEPASRPRRPAVALFQA
PVFTEPQFQTPERAAAAAAAEAAGAVEPQEAEESAPAEAQREEQTGGSRRRRRRRGAGDE
PETQAPETAAADTSADEAEEADESAEDQADGDDQDESEGSGSRRRRRRGGRRRRRGESAD
SDGEGGDASDAESEQTADGQDTEDSADEDDEDSDDATDRDESGGGGSSSSRRRRRRRRRA
GDSGTESESSDDDPERTVVKVREPRPKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRR
VPIITEAEFLARREAVERVMVVRQHGDRTQIGVLEDDVLVEHYVNKEQATSYVGNVYLGK
VQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMAHGPRRIESALKSGQSVLVQVTKDP
IGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRT
AAEGASEDELRRDVERLQQQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVV
VSGDEAWSTIHGYVSHVAPDLAERLQKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSL
VIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDM
VLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGR
GVIVHMEQPTALGGGGKRKKRARAGAAELPHVHEAAVETAEQEAETEAEVVAEAAEPLAL
PAPSFEPDEELYSSAAEAEAAAGRGRSRRRASRRASAPAGAPRGEVAEQGRDKARRGRGR
AEQAEAEAPTAQDVTAEQEVARPVQPEPAAEAQAEPVAVEDPVVEAAQAAQSAPVEEAAP
KGRTRRRATRKVSAPAGSPAGAEATVVTVAETAPAEPAEQAEAAEPVAEPVAEAPAESAA
PARPRRRAVRKPTVSTASEETAVVVVPSAASEEAPEESASERAPEASAEAAQVPASDGAV
TEEAAAEPAPAKKTARKTAKKATAKKAATTKKTAAKKTAAKKTTAKKAAKTTKTAAKKTA
SKKTVAAEQSASSGSSVSASTDEG
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccacagagggttccgaacagaacactccaagcgacaccctg
ccgccccgtcggcggcggcgtgccgcgtcccgcccggcgggaccgcccaccggtgccacc
tccgacgcgccggtggagaccgtcgcgccggccataccggccgccgaggccgaggatctc
gcggccgatgtcgtggagaccgacgaggtccaggaagccactgccgaggccgacaaggct
gccgagcccgtcgtgagcgatgaggctgccgcgcccgccccgcccaagcggcgtcgcgcc
gtgcgccgtgcctccgcgcctgccggcgctccggaggcggccgaggccgccgagaccgtg
gtcacggcgaccgcccccgtctccgaggcggccgaggccgtcacccccgcagctgagccg
gccgaggccgtcactcccgccgcgtccgccgaggggagcgaggacgccgctcccaagcgc
acccggcgtcgcgccacccgcaccgtgacctcgcccgtcaccgcaccggcggagaccgcc
gagaccgtcaccgctccggcggagacggccgagactgccgccgctccggcggaggcggcc
gagaccgtggccgacggcgccgccgaaggtgccgaggccgctgaagaggctgctccgcgt
cggactcgccggcgtgcctcgcggcgggcgtccgcgcccgccggggcgccttccgccgcg
gacgcggtggaaggcaacgccgaggaggcgaaggcacctgtgaccgagaaccccgccgcc
gagcccgcccgcgcgtccgaggcgaccgcctccgagaccgctgccgccgagcccgaccgc
gccgccgacgtccccgccgagaccgcggccgacgaaaccgccgagacggccgaagaggcc
ggaccgcggcgccgtcgccgcgtggtgcgccgggccgccagtggcttcgccgagcccgcc
cagcccgccaagggcgcgagggcctcgaaggccgccgcccgggcgaccggggatgcggcc
gagagcgagagcgagccggcgtcgcgtccgaggcggcccgccgtcgcgttgttccaggcg
cccgtcttcaccgagccccagttccagaccccggagcgggccgctgccgcggccgccgcc
gaggctgccggggcagtcgagccgcaggaggccgaggagtccgcgccggccgaggcccag
cgcgaggagcagaccggcggctcgcgccgtcggcgccgtcgccggggcgccggtgacgag
cccgagacccaggcccccgagaccgccgccgccgacacgtccgccgacgaggcggaggag
gccgacgagtccgccgaggaccaggccgacggcgacgaccaggacgagtccgagggcagc
ggctcgcgccgccgccgtcgccggggcggtcgccgccgccggcgtggcgagtccgccgac
tccgacggcgagggcggcgacgcctcggacgccgagtccgagcagaccgccgacgggcag
gacaccgaggactccgccgacgaggacgacgaggactccgacgacgccaccgaccgcgac
gagtccggcgggggcggctccagcagcagccgccggcgccgtcgccgccgtcgtcgtgcc
ggtgactccggcaccgagtccgagtcctccgacgacgaccccgagcgcacggtcgtcaag
gtccgcgagccccgccccaaggccgagccgtccgacgaggtgcagtccatcaagggctcg
acccgtctggaggccaagaagcagcgccgtcgcgaaggccgcgagcagggccgcaggcgc
gtgccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgagcgtgtcatg
gtcgtccgccagcacggcgaccgcacgcagatcggcgtcctcgaggacgacgtgctcgtc
gagcactacgtcaacaaggagcaggcgacctcgtacgtcggcaacgtctacctcggcaag
gtgcagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgcaac
gccgtcctgtacgccggtgaggtcaacttcgaggcgctcggcatggcccacgggccgcgc
cgtatcgagtccgccctgaagtccggccagtccgtgctcgtccaggtgacgaaggacccg
atcggtcacaagggcgcccgtctgaccagccaggtctccctcccgggccgctacctcgtg
tacgtgcccgagggctccatgaccggcatcagccgcaagctgcccgacaccgagcgggcc
cggctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcacc
gccgccgagggcgcgagcgaggacgagctgcgcagggatgtcgagcggctgcagcagcag
tgggaggacatccagaagaaggccaagagcggcaacgctccgacgctgctgtacggagag
ccggacatgaccgtccgggtcgtgcgcgacatcttcaacgaggacttctccaaggtcgtc
gtcagcggcgacgaggcctggtcgaccatccacgggtacgtctcgcacgtcgcgccggac
ctcgccgagcggctgcagaagtggacctccgaggtcgacgtcttcgccacgtaccggatc
gacgagcagctcgccaaggccctcgaccgcaaggtgtggctgcccagcggcggttcgctg
gtgatcgaccggaccgaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggc
cagggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcggccgaggagatc
gtccgccagctgcggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatg
gtgctggagtccaaccgggacctggtgctgcggcgcctgctggagtgcctgggccgggac
cgtacgaagcaccaggtcgcggaagtgacctcgctggggctcgtgcagatgacccgcaag
cgggtcgggcaggggctgctggagtccttctccgagacctgcgtccactgcaacggacgc
ggtgtcatcgtgcacatggagcagccgacggccctcgggggcggcggcaagcgcaagaag
cgcgcgcgggccggcgccgccgagctgccgcatgtgcacgaggcggccgtcgagaccgcc
gagcaggaggccgagaccgaggccgaggtcgtggccgaggccgccgagcccctcgcgctg
cccgcgccgtccttcgagcccgacgaggagctgtacagcagcgccgccgaggcggaggca
gcggccggccgcgggcggtcgcgtcgccgggcgagccggcgggcgtcggctccggcgggc
gctccgcgcggtgaggtcgccgagcagggccgggacaaggcccggcgcggcaggggccgg
gccgagcaggccgaggccgaggcgccgacggctcaggacgtgaccgccgagcaggaggtc
gcccgtccggtgcagccggagccggccgccgaggcgcaggccgagcccgtggccgtggag
gacccggtggtcgaggccgcgcaggccgcgcagtcggctccggtcgaggaggccgcgccc
aagggccgcacccggcgccgggccacccgcaaggtgtccgctccggccggttccccggcg
ggggccgaggcgaccgtggtgacggtcgccgagaccgcgcccgccgagccggcggagcag
gccgaggccgccgagccggtcgccgagccggtcgccgaggcgcccgcggagagcgccgcc
ccggcccgtccgcgccgccgcgccgtgcgcaagcccacggtgtccacggcgtccgaggag
acggccgtcgtggtcgtcccgtcggccgcgtccgaggaggctccggaggagtccgcgtcc
gagagggctccggaggcgtccgcggaggccgcgcaggtgcccgcgtcggacggtgccgtc
accgaggaggccgccgctgagccggcgcccgccaagaagacggcccgcaagacggccaag
aaggccacggcgaagaaggccgccaccaccaagaagacggcggcgaagaagaccgccgcc
aagaagacgacggccaagaaggcggcgaagaccaccaagacggccgccaagaagaccgcg
tcgaagaagaccgtggcggcggagcagtcggcctcgtccgggtcctccgtctcggcctcc
accgacgagggctga
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