Streptomyces tuirus: GCM10017668_48320
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Entry
GCM10017668_48320 CDS
T07360
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stui
Streptomyces tuirus
Pathway
stui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM10017668_48320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stui03400
]
GCM10017668_48320
Enzymes [BR:
stui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM10017668_48320
DNA repair and recombination proteins [BR:
stui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM10017668_48320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCL22989
UniProt:
A0A7G1NJF8
LinkDB
All DBs
Position
complement(5164611..5165492)
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AA seq
293 aa
AA seq
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MAPITVVEGRRLALSNLEKVLYPATGFTKGEVLHYYATVAEVLLPHLRDRAVSFLRYPDG
PDGQVFFTKNVPPGTPDWVTTAEVPRVEGPSRMVLVQDLPSLMWAANLVTEFHTHQWRVG
TPDEADRIVFDLDPGAPASIVQCCEVALWLRERLARDGLEAYAKTSGSKGLHLLAAVRGA
SSERVSEYAKALAVEAEKAMPGLALHRMTRSLRPGKVFVDWSQNAARKTTAAPYTLRARP
EPTVSAPVTWDEIEECRAPGRLEFRAGDIAPRIQDYGDLLAPLLDTAAAVSLP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctatcacagtggtggaggggcgacggctcgctctcagtaatctggagaaggtg
ctgtatcccgccaccggcttcaccaagggcgaggtgctgcactactacgcgactgtcgcc
gaggtcctgttgccccatctgcgtgatcgggcggtgtccttcctgcggtatccggacggg
ccggacgggcaggtgttcttcacgaagaacgtgccgccgggtacgcccgactgggtcacc
accgccgaggtgccacgggtcgagggaccctcacggatggtcctggtgcaggatctgccg
agcctgatgtgggcggcgaacctcgtgaccgagttccacacccaccagtggcgcgtcggc
actccggacgaggccgaccggatcgtgttcgacctcgatcccggggcgccggcgagcatc
gtgcagtgctgcgaggtggcgctgtggctgcgggaacggctcgcacgcgacggcctcgag
gcctacgccaagacctccggctcgaaggggctgcatctgctcgccgccgtgcgcggggcg
tcctccgagcgggtgtccgagtacgccaaggcactcgccgtcgaggcagagaaggccatg
cccgggctcgcgctccaccggatgaccaggagcctgcgcccggggaaggtcttcgtcgac
tggagccagaacgccgcccgcaagacgacggcggcgccgtacaccctgcgggcccgcccg
gaaccgaccgtctcggccccggtgacctgggacgagatcgaggagtgccgcgcacccggc
cgcctggagttccgcgccggcgacatcgccccgaggatccaggactacggcgatctgctc
gctccgctgctggacacagcggcggccgtatcgctgccgtag
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