Spiroplasma turonicum: STURON_0072
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Entry
STURON_0072 CDS
T04034
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
stur
Spiroplasma turonicum
Pathway
stur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STURON_0072 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stur03019
]
STURON_0072 (rnr)
03016 Transfer RNA biogenesis [BR:
stur03016
]
STURON_0072 (rnr)
Enzymes [BR:
stur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STURON_0072 (rnr)
Messenger RNA biogenesis [BR:
stur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STURON_0072 (rnr)
Transfer RNA biogenesis [BR:
stur03016
]
Prokaryotic type
tRNA degradation factors
STURON_0072 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
OB_RNR_1st
CSD2
S1CSD-TOTE-2
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKU79318
UniProt:
A0A0K1P4V5
LinkDB
All DBs
Position
75477..77573
Genome browser
AA seq
698 aa
AA seq
DB search
MENKILNYLKKNELTTLTEIINTFNNKDEITNVLKKLKDEYKIGWSNDNKIYYINNKYKI
GSIRINDKGFGFVKNFNNLEEDFFVAPNSLNGCISTDEVVYTVEKESDDRMKANIEAISN
RIKNSLVGELVKSKCGRFIDLIISEQGFKNYRIVMVNQKDFKLKPDLILKVKILDVRDKK
LFVKIQKIIGNSNKAIDRIVSIAYEFNIKPEFSPLALKQADEVATKIDFNNNEIKRRLKN
SLTNKCLVTIDGEDSKDLDDAVYVEKLVNGYKLIVAIADVSYYVRPFSELDNSALFKGNS
VYLANKVIPMLPEKLSNGVCSLNPNEDKLCMVAEIDFSNDGKVIKKKVYESIMNSKARLT
YNEVNEIYNGNNPNKRNDEILDMLFVAKELHDFIETERQNRGSIEFEISEPKIILDKEFN
VIDIVKRNRGISEKLIENFMVSANEAVATIVFDKELPFIYRNHDIPKEESLKEWYSSLKA
LGINAKLNDKEKLNPKKIQSALNEIESQVKDETEREVINITLLRYMEKAEYGLDNIGHFG
LASECYTHFTSPIRRYSDLLVHRYLKQYIIEHDLKENKLKNNEKFISKASSIINETERNA
VSAEREVNKVCMCEFMKDKINFEYSGVISAVLKFGIFVQLSNCVEGLVHISELKDYVYDT
EKGIMINKNNNTLRLGQIVKVKVKNADVKKRVIDFVLI
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaataaaatattaaattacctaaaaaaaaacgaattgacaaccctaacagaaatc
ataaacacatttaataataaagatgaaataacaaatgttttaaaaaaattaaaagatgaa
tataaaatcggttggtctaatgataacaaaatttattatattaataacaaatataaaatt
ggttctattagaattaatgacaaaggttttggattcgtaaaaaattttaataatctagaa
gaagatttttttgttgcgcctaattcattaaatggttgcatttcaacagatgaagttgtt
tatactgtcgaaaaagaatctgatgatagaatgaaagctaatatagaagctatatcaaat
agaattaaaaattctttagttggtgaacttgttaaaagcaagtgtggaagatttattgat
ttaataattagtgaacaaggttttaaaaattatagaattgttatggttaatcaaaaagac
tttaaattaaaacccgatcttatattaaaagttaaaatacttgatgttagagataaaaag
ttatttgtaaaaatacaaaaaattataggtaattcaaataaggcgattgatcgcatagtt
tcaattgcatatgaatttaatattaaacctgagttttcaccattagctttaaaacaagca
gatgaagtagctactaaaatagattttaataataatgaaattaaaagaagattaaaaaat
tcattaacaaataaatgcttagttacaattgatggtgaagactcaaaggatttagatgat
gctgtatatgttgagaaactagtcaatggttataaattaattgttgcaattgcagatgtt
tcttattatgtaagaccatttagtgaacttgataatagtgcactcttcaaaggaaactca
gtttatttagcaaataaagttattccaatgttgcctgaaaaactttcaaatggtgtttgt
agtttaaatccaaatgaagataaattatgtatggttgcagaaattgattttagtaatgat
ggtaaggtaattaagaaaaaagtttacgaatcaattatgaattccaaagcaagacttact
tataatgaggttaacgaaatttataatggcaataatccaaataaaagaaatgatgaaatt
ttggatatgttatttgtagcaaaagaactacatgattttattgaaacagaaagacaaaat
agaggttcaatagagtttgaaatttctgaaccaaaaataattttagataaagaatttaat
gttattgatattgtaaaaagaaatagaggaataagtgaaaagttaattgaaaattttatg
gtaagtgctaatgaggcagttgcaacaattgtatttgataaagagctaccattcatatat
aggaaccatgatattccaaaagaagaaagtttaaaagagtgatattcttctttaaaagct
ttgggaataaatgcaaaactaaatgataaagaaaaattaaaccctaaaaaaattcaaagt
gcattaaacgaaatagaatcacaagttaaagatgaaactgagcgggaagttataaatata
acattattaagatatatggaaaaagcagaatatggtcttgataatattggtcattttggt
ttagcgagtgaatgttacactcactttacttctccaatcagaagatatagtgatttattg
gttcatagatatttgaaacaatatataatagagcatgatttgaaagaaaataaacttaaa
aataatgagaagtttatctctaaagcttcaagtattataaatgaaactgaaagaaatgct
gtttctgctgaacgtgaagtaaataaagtttgtatgtgtgaattcatgaaagataaaata
aattttgaatatagtggtgtaatttcagcagtgttaaagtttggtatttttgtccaatta
tcaaattgtgtagaaggattggttcatatatcagaacttaaagactatgtttatgacact
gaaaaaggcattatgattaataagaacaataatactttaagacttggacaaattgttaaa
gttaaagtaaaaaatgcagatgttaaaaaaagagttattgattttgttttaatttaa
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