Streptococcus sp. VT 162: V470_06610
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Entry
V470_06610 CDS
T03287
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
stv
Streptococcus sp. VT 162
Brite
KEGG Orthology (KO) [BR:
stv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stv03019
]
V470_06610
03009 Ribosome biogenesis [BR:
stv03009
]
V470_06610
Enzymes [BR:
stv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V470_06610
Messenger RNA biogenesis [BR:
stv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V470_06610
Ribosome biogenesis [BR:
stv03009
]
Prokaryotic type
rRNA helicases
V470_06610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AHZ48090
LinkDB
All DBs
Position
complement(1319680..1321023)
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AA seq
447 aa
AA seq
DB search
MSFKKFQFKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF
QQLDETSDSVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEKLAS
NQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQF
MVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQLM
QPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATD
LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELEKL
GIKFTPKMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKKKKVKPGYKKKIQWAV
DEKRRKTKRAENRARGRAERKAKRQTF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaagaaatttcaatttaaaaattatatagtagaagccttggaggagttgaag
tttacgactcctaccgaagttcaggaaaagttgattcctattgtcttggcgggtcgtgac
ttggtgggcgagtcaaaaacaggttcaggaaagactcatactttcttattacccattttc
cagcaattagatgaaactagcgatagtgtgcaagcagtcattactgcaccaagtcgtgag
ttggctactcaaatttaccaagcagctcgtcagattgcagctcactcagatgtcgaagtt
cgtgtggttaattatgtaggtggtacggataaggcgcgtcagattgaaaaacttgccagt
aaccaaccacatattgttatcggaacgccaggtcgcatctatgacttggtcaaatctggt
gatttggctattcacaaggccaagacctttgtagttgatgaagccgatatgaccttggat
atgggattcttggaaactgttgataagattgcaggaagccttccaaaagacttgcaattc
atggttttttcagcgacgattcctcaaaaattgcaaccgttcttgaagaaatacttgtca
aatcctgttatggaaaaaatcaagactaaaacagttatctcagatacgatcgataattgg
ttgatttcgaccaagggccgtgacaaaaacgctcaaatttatcagttgactcagttgatg
cagccttatttagcaatgatttttgttaacacaaaaacgcgtgctgatgagttacatgcc
tacttgactgctcaaggattgaaggtagctaagattcatggagatattgctcctcgtgaa
cgcaaacggatcatgaatcaggtgaaaaatctggattttgagtacattgttgcaacagac
ttggcagcgcgtggaattgacattgaaggggtcagccatgttatcaatgatgccattccg
caagacttgtccttctttgttcaccgtgttggacgaactgggcgcaacggactgcctggt
acagctattaccctttaccagcctagtgatgactcggatatccgtgagttggagaaatta
gggatcaagtttactcctaagatggtcaaagacggagagtttcaagatacctatgaccgt
gatcgtcgtgctaatcgtgaaaagaagcaggataagcttgatattgaaatgattggcttg
gttaaaaagaaaaagaaaaaagtcaaacctggctataagaagaagattcaatgggcggtg
gatgaaaaacgccgcaaaaccaagcgtgctgaaaatcgcgcacgtgggcgtgcagagcgt
aaagcaaaacgtcaaacattttaa
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