Streptococcus sp. VT 162: V470_07035
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Entry
V470_07035 CDS
T03287
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stv
Streptococcus sp. VT 162
Pathway
stv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V470_07035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stv03019
]
V470_07035
03009 Ribosome biogenesis [BR:
stv03009
]
V470_07035
Enzymes [BR:
stv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V470_07035
Messenger RNA biogenesis [BR:
stv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V470_07035
Ribosome biogenesis [BR:
stv03009
]
Prokaryotic type
rRNA helicases
V470_07035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
DUF6363
Motif
Other DBs
NCBI-ProteinID:
AHZ48170
LinkDB
All DBs
Position
complement(1397362..1398936)
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AA seq
524 aa
AA seq
DB search
MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLF
SATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQIIENLTKK
RMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKLAAEFSPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKGKGGRGGRRGDDRRDRDRRSGRRDD
FKKGSRGNDRFDKDRRYRNKDNKKPRNTSSEKKTGFVIRNKGDK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaatttaacttgtctgctgatttgctagcagagattgaaaaagctgga
tttgtagaagcaagtcccatccaagaacagaccattccattggctcttgaggggaaagac
gttatcggtcaagcccagactggtacagggaaaaccgcagcctttggcttgccaaccctt
gaaaaaatccgtacagaagaagcaactattcaagccttggtcatcgctccaactcgtgaa
ctcgctgttcaaagtcaagaagaactcttccgctttggtcgtagcaagggagtgaaagtt
cgctcagtttacggtggttcaagcattgaaaaacaaatcaaagcccttaagtcgggtgct
catatcgttgtaggaacaccaggtcgtctcttggacttgatcaaacgcaaggctttgaaa
ttgcacgatattgaaaccctcatccttgatgaagcggacgaaatgctcaacatgggcttc
ctagaagacatcgaagctattatctctcgtgtccctgaaagtcgtcaaaccttactcttt
tcagcaacgatgccagatgctatcaaacgtatcggtgttcagtttatgaaagagcctgag
catgtgaagattgctgccaaagaattgacaacagagctggtggaccagtactatatccgt
gtcaaggaacaagaaaaatttgatactatgacacgtctcatggatgttgaacaaccagag
cttgctatcgtgtttggtcgtaccaaacgccgtgtagatgaattgactcgtgggcttaaa
atccgtggcttccgtgcagaagggattcatggtgacttagaccaaaataaacgtcttcgt
gtccttcgtgattttaaaaatggtaatcttgatgttctagttgcgacagacgtggcagca
cgtggtttggatatctcaggtgtgactcatgtctacaactatgatattccacaagatcct
gaaagttatgttcaccgtatcggtcgtacaggtcgtgctggtaagtcaggtcaatctatt
acctttgtttctccaaatgaaatgggctaccttcaaatcatcgaaaacttgactaagaaa
cgcatgaaaggcttgaaaccagcgacagcagaagaagccttccaagctaagaaacaagta
gcgctcaagaaaatcgaacgagacttcgcagacgaagcaattcgtgggaactttgagaaa
tttgctaaagatgctcgtaaattggctgcagaatttagtccagaagaattggctatgtat
atcttgagtctgacagtccaagatccagacagccttcctgaagtggagattgcgcgtgaa
aaaccactgccatttaaaccatcaggtaatggctttggtggcaaaggcaagggaggtcga
ggaggccgtcgtggggacgaccgtcgagaccgtgatcgccgtagtggtcgccgtgatgat
ttcaaaaaaggcagtcgtgggaacgatcgttttgataaagacagacgttaccgtaataaa
gacaataaaaaacctcgcaacacttcaagcgaaaagaagaccggctttgttattcgtaac
aaaggagacaaatag
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