Streptomyces sp. VB1: OH133_05105
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Entry
OH133_05105 CDS
T11054
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
stvb Streptomyces sp. VB1
Pathway
stvb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OH133_05105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
stvb03000
]
OH133_05105
03400 DNA repair and recombination proteins [BR:
stvb03400
]
OH133_05105
Enzymes [BR:
stvb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
OH133_05105
Transcription factors [BR:
stvb03000
]
Prokaryotic type
Helix-turn-helix
AraC family
OH133_05105
DNA repair and recombination proteins [BR:
stvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OH133_05105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
UZI27552
LinkDB
All DBs
Position
complement(1190497..1191969)
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AA seq
490 aa
AA seq
DB search
MHTDTERCVRAVQSKDARFDGWFFTAVLTTRIYCRPSCPVVPPKVRNMTFYPSAAACQQA
GFRACKRCRPDTSPGSPEWNARADSVARAMRLIRDGVVDREGVPGLASRLGYSARQIERQ
LLAELGAGPLALARAQRAQTARLLIETTALPMAQVAFAAGFSSIRTFNETVREVFGLAPG
ELRTRAARGPRPAAVPGVIVLRLPYRAPLNPSNLFGHLAATAVPGVEEWRDGAYRRTLTL
PYGHGVVALSPAPDHIACRLSLTDPRDLTRAISRCRWLLDLDADPVAVDAQLRIDPLLAP
LVDAGPGRRVPRTVDGAEFAVRAVLGQQVSTAAARTHAARLVTAHGVPVEDPEGGLTHLF
PTPEALAGLDPQALALPGTRRTTLTTLVAALAEDRLRLDTDTDWEQARAELAALPGFGPW
TVESIAMRALGDPDAFLPTDLGIRRAAERLGLPATPAALTARAVDWRPWRAYAVQYLWTV
DDHPINHLPA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccgacaccgagcgctgcgtgcgggccgtccagtccaaggacgcccgcttcgac
ggctggttcttcaccgcggtcctgaccacccggatctactgccgccccagctgccccgtc
gtgccgcccaaggtccgcaacatgaccttctaccccagcgccgccgcctgccagcaggcc
ggattccgggcctgcaaacggtgccgccccgacaccagccccggctcccccgagtggaac
gcccgcgccgactcggtcgcccgtgccatgcgcctgatccgggacggggtcgtcgaccgc
gagggcgtgcccgggctcgcctcccggctcggctactccgcacggcagatcgaacgccag
ctgctggccgagctgggcgccggcccgctcgccctggcccgcgcccagcgggcgcagacc
gcccgcctcctcatcgagacgaccgcgctgcccatggcccaggtcgcgttcgccgccggc
ttctcctcgatccgcaccttcaacgagacggtgcgcgaggtcttcggcctggcccccggc
gaactgcgcacccgagccgcccggggcccccggccggccgccgtaccgggcgtcatcgtg
ctccgcctcccgtaccgggccccgctcaaccccagcaacctcttcggccacctcgccgcg
accgccgtccccggcgtcgaggagtggcgggacggcgcgtaccggcgcaccctcaccctc
ccgtacgggcacggcgtcgtcgccctgagccccgcgcccgaccacatcgcctgccggctc
tccctcaccgacccccgcgacctcacccgggccatcagccgctgccgctggctcctcgac
ctggacgcggacccggtcgccgtcgacgcgcaactgcgcatcgacccgctgctcgccccg
ctggtcgacgcgggacccggccgccgggtgccccgcaccgtggacggtgcggagttcgcc
gtacgcgccgtgctcggccagcaggtctccaccgccgccgcccgcacccacgccgcccgg
ctggtcaccgcccacggcgtcccggtcgaggaccccgagggcgggctgacgcacctcttc
ccgaccccggaggcgctggcgggactcgaccctcaggccctggccctgccgggcacccgc
cgcaccaccctcaccacgctcgtcgccgccctcgcggaggaccggctgcggctcgacacc
gacaccgactgggagcaggcccgcgccgaactggccgccctgcccggtttcggcccctgg
acggtcgagtccatcgccatgcgggccctcggcgaccccgacgccttcctccccaccgac
ctcggcatccgccgggcggccgagcggctgggcctgccggccacccccgccgccctcacc
gcacgggccgtcgactggcgcccctggcgggcgtacgccgtgcagtacctctggacggtg
gacgaccaccccatcaaccacctgcccgcctga
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