Streptomyces sp. VB1: OH133_11580
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Entry
OH133_11580 CDS
T11054
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stvb Streptomyces sp. VB1
Pathway
stvb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OH133_11580 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stvb03021
]
OH133_11580 (rho)
03019 Messenger RNA biogenesis [BR:
stvb03019
]
OH133_11580 (rho)
Transcription machinery [BR:
stvb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OH133_11580 (rho)
Messenger RNA biogenesis [BR:
stvb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OH133_11580 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZI28719
LinkDB
All DBs
Position
complement(2629036..2631099)
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AA seq
687 aa
AA seq
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MSDTTDLMGVTADKSVDSAAPAEGAATGTTARRRRSGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGGSAAPKASSKAAEAPAEAESKPKRRATSKARTGDEPAAAAA
EKDAAQQQIDIPGQPASDEQPAGERRRRRATAQAGSPDTKTEVTTEVKAKAEPQAEQKTE
ERGEPKGDAKAEAAADTAEGRRGDRQGRGERGDRGERRERQRDRRGKGDDQGQQGGGGQR
PQRQGQGQGQGGGGQGQGQGQQNRDNGPQDDFDDEAGGRRGRRGRYRDRRGRRGRDDFAS
DVQVADDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAV
RQPKDGERREKFNALVRLDSVNGMAPESGRGRPEFQKLTPLYPQDRLRLETDSNILTTRI
VDLVAPIGKGQRGLIVAPPKTGKTMILQAIANAITVNSPECHLMVVLVDERPEEVTDMQR
SVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS
GRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNM
ELKLDRKLSDKRIFPAVDVDASSTRKEEILLGTDELAVVWKLRRVLHALDQQQAIELLLD
RMKKTQSNAEFLLQIQKTTPGSGNGND
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacaagagcgtcgacagcgccgcg
cccgccgaaggtgctgccactggcaccaccgcacggcgccgccgctccggcaccggcctc
gagggcatggtcctggccgagctgcagcaggtcgcgtccggcctcggcatcaggggcact
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcgggtggcgga
tctgccgcccccaaggcctcctccaaggccgcagaggcccccgccgaggcggagagcaag
ccgaagcgccgcgcgacctcgaaggcgcgcaccggggacgagcccgctgccgccgccgcc
gagaaggacgcggcccagcagcagatcgacatccccggtcagccggccagcgacgagcag
cccgcgggcgagcgtcgtcgccgtcgtgcgaccgcgcaggcgggcagccccgacaccaag
accgaggtcacgaccgaggtcaaggccaaggctgagccccaggccgagcagaagaccgag
gagcggggcgagccgaagggcgacgccaaggccgaggccgccgccgacacggccgagggt
cgtcgcggcgaccgtcagggccgcggcgagcgtggcgaccgcggtgagcggcgtgagcgt
cagcgcgaccgccgcggcaagggcgacgaccagggccagcaaggcggtggcgggcagcgc
ccgcagcgccagggccaagggcaaggccagggcggtggcggtcagggccaggggcagggc
cagcagaaccgtgacaacggtccgcaggacgacttcgacgacgaggcgggcggccgtcgc
gggcgtcgcggccgctaccgcgaccgccgtggccgtcgcgggcgcgacgacttcgccagc
gatgtgcaggtggccgacgacgacgtcctgatccccgtcgcgggcatcctggacatcctc
gacaactacgcgttcatccggacctccggctacctgccgggcccgaacgacgtgtacgtc
tcgctcgcccaggtccgcaagaacggcctgcgcaagggcgaccacgtcaccggcgcggtg
cgccagcccaaggacggcgagcggcgcgagaagttcaacgcgctggtccgcctcgactcg
gtcaacggcatggccccggagtcgggccgcggccgccccgagttccagaagctgaccccg
ctctacccgcaggaccggctccgtctggagaccgactccaacatcctgacgacgcggatc
gtcgacctggtggccccgatcggcaagggtcagcgcgggctcatcgtggccccgccgaag
accggcaagaccatgatccttcaggcgatcgccaacgcgatcacggtcaacagccccgag
tgccacctgatggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcagcgg
tcggtgaagggcgaggtcatctcctccaccttcgaccgtcccgccgaggaccacaccacc
gtcgccgagctggccatcgagcgtgccaagcgtctcgtcgagctgggtcacgacgtggtc
gtcctgctcgactcgatcacccgtctgggccgcgcgtacaacctcgcggcgccggcctcc
ggccgcatcctgtccggtggtgtcgactcgaccgcgctctaccccccgaagcgcttcttc
ggcgccgcgcgcaacatcgaggacggcggctcgctgaccatcctcgccaccgcgctcgtc
gagaccggctcgcgcatggacgaggtgatcttcgaggagttcaagggcaccggcaacatg
gagctcaagctcgaccggaagctctcggacaagcggatcttcccggcggtggacgtcgac
gcgtcctccacccgtaaggaagagatcctgctcggcaccgacgagctggcggtcgtctgg
aagctgcgccgggtgctgcacgcgctcgaccagcagcaggcgatcgagctcctcctggac
cggatgaagaagacccagtccaacgcggagttcctgctccagatccagaagacgacgccg
ggcagcggaaacggcaacgactga
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