Streptomyces sp. VB1: OH133_12055
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Entry
OH133_12055 CDS
T11054
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
stvb Streptomyces sp. VB1
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stvb03021
]
OH133_12055
Transcription machinery [BR:
stvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OH133_12055
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
MarR_2
PF0610-like_N
HTH_24
HTH_10
HTH_AsnC-type
HTH_3
DUF7343
Sigma70_ECF
MarR
HTH_Crp_2
NirdL-like_HTH
IF2_N
DUF8073_C
HTH_ParB
GerE
HTH_AraC
HTH_28
DUF4423
Motif
Other DBs
NCBI-ProteinID:
UZI28804
LinkDB
All DBs
Position
2731274..2732203
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AA seq
309 aa
AA seq
DB search
MRDETIRSGVVRPAAIPEQEARPHPVDGADGPESVDVAVEQQSQAERAGQMSEHGHHDPH
DRSGARALFFELRELPDGSAEKAELRNRLVRMHLPLVEHLARRFRNRGEPLDDLTQVATI
GLIKSVDRFDPDRGVEFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLSLTTATAEL
SQQHGRSPTVHELAERLGISEEEVLEGLESANAYSTLSLDVPDTDDESPAVADTLGSEDE
ALEGVEYRESLKPLLEDLPPREKRILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQ
LRERLLVEE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggacgagacgatccgatcgggggtggtgcgcccagcagccatcccggagcaagag
gcccggccgcatccggtggacggagcggacgggcccgagagtgtcgacgtcgcggtggag
cagcagtcgcaggcagagcgggcgggccagatgagcgagcacgggcaccacgatccacac
gaccgcagcggggcccgggccctcttcttcgagctgcgggagctgcccgacggttcggcc
gagaaggccgagctgcgcaacaggctggtgcggatgcacctgccgctggtggagcacctg
gcccgccgcttccgcaaccgcggggagccgctggacgacctgacccaggtggccacgatc
gggctgatcaagtccgtggaccggttcgacccggaccggggcgtggagttctccacgtac
gccacccccacggttgtcggcgagatcaagcgccacttccgggacaagggctgggcggtg
cgggtgccgcgccgtctccaggagctgcggctgtcgctgaccacggccaccgcggagctc
tcccagcagcacggccgctcgccgacggtgcacgagctggccgagcggctgggcatctcc
gaggaggaggtgctggagggcctggagtcggccaacgcctacagcacgctctcgctggac
gtgccggacacggacgacgagtcgccggcggtcgcggacacgctgggctcggaggacgag
gcgctggagggcgtggagtaccgggagtccctcaagccgctcctggaagacctgccgccg
cgcgagaagcgcatcctgctgctgcgcttcttcgggaacatgacccagtcgcagatcgcc
caggaggtcggcatctcgcagatgcacgtctcccggctgctggcccggaccctggcgcag
ctgcgcgagcggctgctcgtcgaggagtag
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