Streptomyces sp. VB1: OH133_12415
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Entry
OH133_12415 CDS
T11054
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
stvb Streptomyces sp. VB1
Pathway
stvb03420
Nucleotide excision repair
stvb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OH133_12415
03430 Mismatch repair
OH133_12415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stvb03400
]
OH133_12415
Enzymes [BR:
stvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OH133_12415
DNA repair and recombination proteins [BR:
stvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OH133_12415
MMR (mismatch excision repair)
Other MMR factors
OH133_12415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UZI28869
LinkDB
All DBs
Position
complement(2807085..2810570)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSPRITDPEQLKELLGIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQ
VAPEQVLGLTFTNKAAGELAERVRRALIAAGVTDPDVIDPDNPPGEPTISTYHAFAGRLL
TEHGLRIGLEPTTRLLADATRYQLAAKVLREAPGPYPALTRSFPTLVSDLLALDGELSEH
LVGPGALHRHDTELLSALEHTKLSNADLRKIPEAAEARRSLLGLTERYRTAKRSRDLLDF
GDQIALSAELALTRPEVGKILREEFRVVLLDEYQDTSVAQRLLLSALFGAGPDTAATGHA
VTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRYSLSENRRSGGRLLQLANSLA
GPLRAMHEGVEALRPAPGAERDGMVRCALLTTHTQEIDWLADSLAHLVRTGTPPGEIAVL
CRTAGDFPEIQAALVARDIPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTG
PRWRIGPRDLALLGRRARLLVHRAGHADDADPDQRLADAVEGTDPAEVISLADALDTFLV
VGDAADDGLPFSAEARVRFARLARELRDLRRSLADPLMDVLHRVLATTGLEVELSASPQA
LAARRRETLANFLDTAARFASLDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLT
AHKSKGLEWDVVAVPGLVTGQFPSDRAREAWTAQPQVLPHALRGDAETLPALDTHDGLDA
KGIKAFKAEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLDALYEH
CAAGHGEIEAWADEPAEDEENPALADRDADLAWPLPLDADALARRRAARDTVLAHLERLA
TGEPAHEPDEAPADDTPADEELPDEEPFDAESLDEEPLDEDWDWDALPTERPPGAPGTAP
DPAPDTAPHPPPHIPAARHPQEAGPAERLTPEEARTLASWDRDLDSLAGELRRARATVRE
VLVPAALSATQLLRLAEDPDAFARELARPMPRPPQPAARRGTRFHAWVESRYEELPLPML
GPDELPGGDESDAEIADERDLAELKEAFERTAYARRTPYRVETPFQITLAGRVIRGRIDA
VYRTGDRYEIVDWKTTRHRTADPLQLAVYRLAWAELHDLPLEEVTATFLYVRSGETVHPQ
GLPGRAELERILLDEPAPGDG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
gtgtccccacgtatcaccgatcccgagcagctcaaggagctcctcgggatcccgttcacc
ccggagcagacggcctgcatcaccgcgccgcccgccccgcaggtgatcgtggccggggcc
gggtcgggcaagaccacggtgatggccgcccgcgtggtctggctggtcggcaccggacag
gtcgcgccggagcaggtcctcggcctcaccttcaccaacaaggcggccggcgagctggcc
gagcgcgtccgcagggcgctcatcgccgccggggtcaccgaccccgacgtcatcgacccg
gacaatcccccgggcgaacccaccatctccacctaccacgccttcgccggccgcctcctc
accgagcacggcctgcgcatcggcctggagccgaccacccgcctcctcgccgacgccacc
cgctaccagctcgccgcgaaggtgctgcgcgaggccccgggcccctatccggcgctcacc
cggtccttccccaccctggtcagcgatctcctggcgctcgacggggagctgtccgaacac
ctcgtcgggcccggcgcgctgcaccgccacgacaccgagctgctgagcgccctggagcac
acgaaactcagcaacgccgacctccgcaagatccccgaggccgccgaggcccgccgctcc
ctcctcggtctcaccgagcgctaccgaaccgccaagcgcagccgcgacctgctggacttc
ggcgaccagatcgccctctccgccgagctggccctgacccggcccgaggtcgggaagatc
ctgcgcgaggagttccgggtggtcctcctcgacgagtaccaggacacgtcggtggcccag
cggctgctgctctccgcgctgttcggagccggcccggacaccgccgccaccggccacgcc
gtcaccgccgtgggcgacccctgccaggcgatctacggctggcgcggcgcgtccgtcgcc
aacctcgacgacttccccgagcacttcccgcatgccgacggtacccccgccacccgctac
agcctcagcgagaaccggcgcagcggcggccggctcctccagctcgccaacagtctcgcc
ggacccctgcgggcgatgcacgagggcgtcgaggcgctgcgccccgccccgggagccgag
cgggacggcatggtccgctgcgccctgctgaccacgcacacccaggagatcgactggctc
gccgactccctcgcccacctcgtgcgcaccggcaccccgccgggcgagatcgccgtcctg
tgccgcaccgccggggacttccccgagatccaggcggcgctggtcgcccgggacatcccg
gtcgaggtcgtcggccttgccgggctgctccacctgcccgaggtcgcggacctggtcgcc
gtctgcgaggtcctccaggacccgggggccaatgcctccctggtccgcctcctcaccgga
ccgcgctggcgcatcggcccccgtgacctcgcgctcctgggccgccgcgcccgcctcctc
gtgcaccgggccggccacgcggacgacgccgacccggaccagcggctcgcggacgcggtc
gagggcacggacccggccgaggtgatatcgctcgcggacgcgctggacaccttcctggtc
gtgggggacgcggccgacgacgggctgccgttctccgccgaggcacgcgtccgcttcgcc
cgcctcgcccgcgagctgcgcgacctgcgccgctcgctcgcggaccccctgatggacgtc
ctgcaccgggtcctggccaccaccggcctcgaggtcgagctgtccgcgtccccgcaggcg
ctggccgcccgccgccgggagaccctcgccaacttcctggacaccgcggcccggttcgcc
tccctggacggcgaggcgaccctgctcgccttcctcggcttcctgcggaccgccgcgcag
tacgagaaaggcctcgacaacgcgctgcccggcggcgagaacaccgtaaaggtcctcacc
gcccacaagtccaagggcctggaatgggacgtcgtcgccgtacccggactggtcacgggc
cagttcccgagcgaccgggcccgcgaggcgtggaccgcccagccccaggtgctcccgcac
gccctgcgcggcgacgcggagacgctcccggccctcgacacgcacgacggcctcgacgcc
aaggggatcaaggcgttcaaggcggagatgaaggagcaccagcacacggaggaactgcgc
ctcggctacgtcaccttcacccgcccccgctccctgctcctcggctccggccactggtgg
ggcccgtcccagaagcggacgcggggcccgtccgccttcctcgacgcgctgtacgagcac
tgcgcggcgggccacggcgagatcgaggcctgggcggacgagcccgcggaggacgaggag
aacccggccctcgcggaccgggacgccgacctggcctggccgctcccgctggacgccgac
gccctcgcccgccgccgcgccgcccgggacacggtgctggcccacctggaacggctggcc
accggtgagcctgcgcacgagcccgatgaggcaccggccgatgacacaccggccgacgag
gaactgcccgacgaggagccgttcgacgcggagtcgctcgacgaggagccgctcgacgag
gactgggactgggacgcgctccccaccgaacgccccccgggcgcacccgggacggcaccg
gacccggcacctgacaccgcaccgcacccgcccccgcacatcccggccgcccgccacccc
caggaggctggtcccgcggaacggctcacccccgaggaggcccgcaccctcgcctcctgg
gaccgggacctggactccctggccggggagctgcgccgcgcccgcgccaccgtgcgcgag
gtcctcgtgcccgccgcgctctccgccacccagctgctgcgcctggccgaggaccccgac
gccttcgcccgggagctggcccggcccatgccccgcccgccccagcccgccgcccgccgg
ggcacccggttccacgcctgggtggagtcgcggtacgaggaactgccgctgcccatgctc
ggccccgacgaactgcccgggggcgacgagagcgacgcggagatcgccgacgagcgggac
ctcgccgagctgaaggaggcgttcgagcgcaccgcgtacgcccggcgcacgccgtaccgg
gtggagaccccgttccagatcaccctggcgggccgcgtgatccggggccggatcgacgcc
gtctaccgcacgggcgaccggtacgagatcgtcgactggaagaccacccgccaccgcacc
gccgacccgctccagctcgccgtctaccggctggcctgggccgaactgcacgatctgccg
ctcgaagaggtcaccgccaccttcctctacgtacgcagcggggagaccgtccacccgcag
ggactgcccggccgggccgagctggagcggatcctgctggacgagccggcccccggggac
ggatag
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