Streptomyces sp. VB1: OH133_21975
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Entry
OH133_21975 CDS
T11054
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stvb Streptomyces sp. VB1
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stvb03016
]
OH133_21975
Enzymes [BR:
stvb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OH133_21975
Transfer RNA biogenesis [BR:
stvb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OH133_21975
Prokaryotic type
tRNA splicing ligases
OH133_21975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UZI30565
LinkDB
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Position
4832528..4833721
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWADPASVEDGAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHGDAVDLG
KLHGFSTAGWDDFWGRFGGIADAVKFRQERATKQMGTLGSGNHMIEFCLDSEGAVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQSLVDRDLAVFISETPQMAAYRNDLYWAQEYAKYNR
AIMMALFKDVVRKEFKKVKPVFEQEISCHHNYVAEERYDGADLLVTRKGAIRAGSGEFGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFTVRDLEEQTRGVECRKDSG
VLDEIPAAYKPIEQVMEQQRDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagagatgccgggggcgaaggtccccatccggatgtgggcggaccccgcg
tcggtcgaggacggggcgatgcagcagctgcgcaacgtctccacgctgccgtggatcaag
ggcctcgccgtcatgccggacgtccacttcggcaagggggcgacggtcggttcggtgatc
gcgatgcagggcgcggtgtgcccggccgcggtcggggtggacatcggctgcgggatgtcc
gccgtcaagacgtccctcaccgcgaacgatcttcccggcgacctgtcgcggctgcgctcc
aagatcgagcaggccatcccggtcggccgggggatgcacggcgacgcggtggacctgggg
aagctgcacgggttctcgacggcgggatgggacgatttctgggggcggttcggggggatc
gcggatgcggtcaaattccgccaggagcgcgccacgaagcagatgggaacgctcggctcg
ggaaatcacatgatcgagttctgcctcgacagtgagggtgcggtgtggctgatgctgcat
tcgggctcccgcaacatcggcaaggaactcgccgagcaccacatcggcatcgcacagaag
cttccgcacaatcagagcctcgtcgaccgggacctggccgtcttcatctcggagaccccg
cagatggccgcctaccggaacgatctgtactgggcgcaggagtacgccaagtacaaccgc
gcgatcatgatggcgctcttcaaggacgtggtccgcaaggagttcaagaaggtgaagccc
gtcttcgagcaggagatctcctgccaccacaactacgtggcggaggagcggtacgacgga
gcggacctactggtcacccgcaagggagcgatccgcgccggctccggcgaattcgggatc
atccccggctcgatgggcaccagttcgtacattgtgaagggcctcggcaacgagaaggcg
ttcaactcggcctctcacggagccggtcgccggatgagccggaacgcggccaagcgtcgc
ttcacggtacgtgacctggaggagcagacgcgcggtgtggagtgccgcaaggactccggc
gtcctggacgagatcccggccgcgtacaagccgatcgagcaggtcatggagcagcagcgt
gacttggtcgaggtcgtcgcgaagctcaagcaggtcatctgcgtcaagggctga
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