Streptomyces sp. VB1: OH133_25345
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Entry
OH133_25345 CDS
T11054
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
stvb Streptomyces sp. VB1
Pathway
stvb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OH133_25345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stvb03400
]
OH133_25345
Enzymes [BR:
stvb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OH133_25345
DNA repair and recombination proteins [BR:
stvb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OH133_25345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
Helicase_RecD
TraI_hel_assoc_N
PIF1
PhoH
NPHP3_N
AAA_16
UvrD_C
DEAD
nSTAND3
HTH_IclR
UvrD-helicase
DUF87
TrwB_AAD_bind
AAA
SLFN-g3_helicase
ABC_tran
ATPase_2
AAA_28
Motif
Other DBs
NCBI-ProteinID:
UZI31156
LinkDB
All DBs
Position
5599279..5601504
Genome browser
AA seq
741 aa
AA seq
DB search
MSNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWG
SHSQYGKQFTVENYTTVLPATIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQE
PKRLVEVPGLGPKRTKMIATAWEEQKAIKEVMVFLQSVEVSTSIAVRIYKKYEDASISVV
KNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPVTAVYLVPFHRAELSLAG
QVRRLLKTGEDRMPAFRDVDWDKALAWLATRTGATLAPEQEQAVRLALSRKVAVLTGGPG
CGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGAEASTVHRLLELKPGGDAAYD
RDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLGDLLAE
GGPVPAVRLTRIFRQAQQSGVVTNAHRINAGQPPLTEGLSDFFLFVEDETEDAGKLAVDV
AARRIPAKFGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAITPARPDLPEKRFGGRVFRV
GDKVTQIRNNYDKGENGVFNGTVGVVTGLDLDEQKLTVHTDEDEEIGYDFDELDELAHAY
AMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGEDFA
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacatggccgtcctcgaaggtgtcctggagcggatcacctacgccaacgaggag
aacgggtacacggtcgcccgcgtcgacaccggacgcggagccggcgacctcctcaccgtc
gtcggcgcgctgctcggcgcgcaggtcggtgaatcgctgcggatggagggccgttggggc
tcgcactcccagtacggcaagcagttcaccgtggagaactacaccaccgtgctgcccgcc
accatccagggcatccgccgctatctcggctccggactgatcaaggggatcgggccggtg
atggccgaccggatcaccacccacttcggcgtcgacaccctcgacatcatcgagcaggag
ccgaagcgcctcgtcgaggtccccggcctcggccccaaacgaacgaagatgatcgcgacc
gcctgggaggagcagaaggcgatcaaggaggtcatggtcttcctccagagcgtcgaggtc
tccacctccatcgccgtccgcatctacaagaagtacgaggacgcctcgatctccgtcgtg
aagaaccagccctaccggctggccgccgacgtctggggcatcggcttcctcaccgccgac
cggatcgcccaggccgtcggcattccgcacgacagccccgagcgggtcaaggccggcctc
cagtacgccctgtcccagtcctccgaccaggggcactgctacctccccgaggagcggctc
atcgcggacggcgtcaagctgctccaggtcgacaccgggctggtcatcgagtgcctggcc
gagctggccgccgatccggagggcgtcgtccgggagaaggtgccgtcccccgagggcggc
gaaccggtcaccgctgtctacctcgtccccttccaccgggccgagctgtccctcgccggg
caggtccgccgcctgctgaagaccggcgaggaccgcatgccggccttcagggatgtggac
tgggacaaggccctggcctggctcgccacccgtacgggggccaccctcgcgcccgagcag
gaacaggccgtacggctcgcgctcagccggaaggtggccgtcctgaccggcggccccggc
tgcgggaagtcgttcaccgtacggtccatcgtcgagctggcccgggccaagaaggccaag
gtggtgctcgccgcccccaccgggcgcgccgccaagcggcttgccgagctgaccggggcc
gaggcgtccaccgtgcaccggctcctggagctgaagccgggcggggacgcggcctacgac
cgggaccgcccgctggacgcggatctggtcgtcgtggacgaggcgtcgatgctcgacctg
ctgctcgccaacaagctcgtgaaggcggtggcacccggtgcccacctcctcctcgtgggt
gacgtcgaccagctgccctcggtcggcgcgggggaggtgctgggcgatctgctcgcggag
ggcggcccggtccccgccgtccggctcacccggatcttccgccaggcccagcagtccggc
gtcgtgaccaacgcccaccggatcaacgccgggcaaccgccgctcacggaggggctgagc
gacttcttcctcttcgtggaggacgagacggaggacgcgggcaagctcgccgtcgatgtg
gcggcccgccgcattccggccaaattcggcctcgatccccgccgtgacgtgcaggttctc
gccccgatgcaccggggcccggcgggtgcggggaatctgaacgggctgctccagcaggcc
atcaccccggcccgccccgaccttcccgagaagcgcttcggcggccgggtcttccgggtc
ggcgacaaggtcacccagatccgaaacaactacgacaagggcgagaacggcgtcttcaac
ggcacggtcggcgtcgtcaccggccttgacctggacgaacagaagctcaccgtccacacc
gacgaggacgaggagatcgggtacgacttcgacgagctggacgagctggcccacgcgtac
gccatgaccatccaccgctcccagggcagcgagtatccggccgtcgtcatccccgtcacc
accagtgcctggatgatgctccagcgcaacctgctctacacggccgtgacccgggccaag
aagctggtggtcctggtcgggtcccgtaaggcgatcggccaggcggtccggacggtttcc
gcaggcagacgctgtacggcactggatttccggctccggggcggctccggagaagacttc
gcgtaa
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