Streptomyces sp. VB1: OH133_29170
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Entry
OH133_29170 CDS
T11054
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
stvb Streptomyces sp. VB1
Pathway
stvb03030
DNA replication
stvb03430
Mismatch repair
stvb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OH133_29170 (dnaE)
03430 Mismatch repair
OH133_29170 (dnaE)
03440 Homologous recombination
OH133_29170 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stvb03032
]
OH133_29170 (dnaE)
03400 DNA repair and recombination proteins [BR:
stvb03400
]
OH133_29170 (dnaE)
Enzymes [BR:
stvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OH133_29170 (dnaE)
DNA replication proteins [BR:
stvb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OH133_29170 (dnaE)
DNA repair and recombination proteins [BR:
stvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OH133_29170 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
DUF655
Motif
Other DBs
NCBI-ProteinID:
UZI31835
LinkDB
All DBs
Position
6543938..6547474
Genome browser
AA seq
1178 aa
AA seq
DB search
MTKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMTDHGNLHGAYDFFHSATKA
GVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFRL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKD
IFGADKYFLELMDHGIEIERRVRDGLLEIGKKLDIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKTTDEMYAVDSSDAWQQGCANTLLVAQQIDTTGMFEAKN
LMPKFEIPDGFTEITWFQEEVRVGMGRRFPNGVPDDRQKQVEYEMDIIIQMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPIEHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPLWTRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAIKMVKS
NKGVDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFEDISAVSALY
RPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQVQKAAQIVAG
YSLGEADILRRVMGKKKPEELAKNFVLFEAGAKKNGFSDAAIKALWDVLVPFAGYAFNKA
HSSAYGLVTYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNES
LSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLDKVEAVVCNKRTV
ESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEESGEPGFGLD
VEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQLMSGDYGDGAIVT
VGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDTVVFVKGRLD
KREDVPRLVAMEMQVPDISNAGTNAPVVLTIPTVKITPPMVTRLGEVLSHHRGDTEVRIK
LQGPRKTTVLRLDRHRVKADSALFGDLKVLLGPACLAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagccgcccttcacgcacctgcacgttcacacccagtactcgctgctggacggt
gcggcgcggctcaaggacatgttcgatgcctgcaacgagatgggcatgtcgcacatcgcg
atgaccgaccacggcaacctccacggggcctacgacttcttccactcggcgacgaaggcg
ggcgtcacgccgatcatcggcatcgaggcgtatgtcgccccggagtcgcgcaaacacaag
cgcaaggtgcagtggggacagccgcaccagaagcgcgacgatgtgtccggatccggtggt
tacacccacaagacgatctgggcgtccaacaagaccggactgcacaacctcttccggctc
tcctccgacgcgtacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgagggcctcatcgcctccaccggctgcccctccggcgaggtgcag
acccggctgcggctcggccagttcgacgaggcggtccaggcggcctccgactacaaggac
atcttcggcgcggacaagtacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacgggctgctggagatcggcaagaagctcgacatcccgccgctcgtgacg
aacgactcccactacacgtacgcccacgaggccaccgcccacgacgccctgctctgcatc
cagaccggcaagaacctctcggaccccgaccgcttccgcttcgacggcaccggctactac
ctcaagacgacggacgagatgtacgccgtcgactcctccgacgcctggcagcagggctgc
gccaacacgctcctggtcgcccagcagatcgacaccaccggcatgttcgaggcgaagaac
ctcatgccgaagttcgagatcccggacggcttcacggagatcacctggttccaggaggag
gtccgggtcggcatgggccgccgcttcccgaacggcgtccccgacgaccggcagaagcag
gtcgagtacgagatggacatcatcatccagatggggttcccggggtacttcctggtcgtc
gccgacttcatcatgtgggccaagaacaacggcatcgcggtgggccccggccgtggttcc
gccgccggatcgatcgtctcgtacgcgatgggcatcaccgacctcgacccgatcgagcac
ggactgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgacgtcgacatc
gacttcgacgagcgtcggcgcgtcgaggtgatccggtacgtcaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggccaagaacgccatcaaggac
tccgcccgcgtcctcggctacccctacgcgatgggcgaccggctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcaacggcatcaccgaccccaagcacccgcgc
tacagcgaggcgggcgagatccgggggatgtacgagagcgaaccggacgtcaagaaggtc
atcgacaccgccaagggagtcgagggcctggtccggcagatgggcgtgcacgccgccggc
gtcatcatgtccagcgagccgatcgtcgaccacgcgccgctctggacgcggcacaccgac
ggcgtcaccatcacgcagtgggactacccccagtgcgagtcgctcggcctgctgaagatg
gacttcctggggctgcgcaacctgacgatcatggacgacgccatcaagatggtgaagtcc
aacaagggcgtcgacctggagatgctctccctcccgctggacgaccccaagacgtacgaa
ctgctctgccgcggcgacacgctcggcgtcttccagttcgacggcgggccgatgcgctcc
ctgctgcgccagatgcagcccgacaacttcgaggacatctccgctgtctcggccctctac
cggccgggcccgatgggcatgaactcgcacacgaactacgcggagcgcaagaacggccgc
caggagatcaccccgatccacccggagctggaggagcccctcaaggaggtcctcggcctc
acctacggcctgatcgtctaccaggagcaggtccagaaggccgcccagatcgtcgccggg
tactcactgggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgaggaa
ctggcgaagaacttcgtcctcttcgaggccggcgccaagaagaacggcttctccgacgcc
gcgatcaaggcgctgtgggacgtgctggtcccgttcgccgggtacgccttcaacaaggcg
cactcctccgcgtacggactggtcacctactggaccggctacctcaaggcgaactacccc
gccgagtacatggccgccctgctgacctcggtcaaggacgacaaggacaagtccgcggtc
tacctcaacgagtgccgccgcatgggcatcaaggtgctcccgcccaacgtcaacgagtcg
ctgtccaacttcgccgcccagggcgacgacgtgatcctcttcggcctgaccgccatccgc
aacgtcggccagaacgtcgtcgactcgatcatccggtcccgcaaggcgaaggggaagtac
agcaccttccccgacttcctcgacaaggtcgaggcggtcgtctgcaacaagcgcaccgtg
gaatcgctcatcaaggccggcgcgttcgacgagatgggccatacccgcaagggcctcgtc
gcccaccacgaaccgatgatcgacaacgtggtgcaggtcaagcgcaaggaggccgagggg
cagttcgacctcttcggaggcggcgaggaggagagcggcgagccgggattcgggctcgac
gtggagttctccgacatcgagtgggagaaggcctacctgctggcccaggaacgggaaatg
ctcggcctgtacgtctccgaccacccgctgttcggcctggagcacgtgctgtccgacaag
gccgactcctcgatctcccagctcatgagcggggactacggggacggcgccatcgtcacc
gtcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgggcc
atcgccaccgtggaggacctggcgggctccatcgagtgcatgttcttccccgccacctac
cagctggtctccacccagctcgtcgaggacaccgtcgtcttcgtcaagggacggctcgac
aagcgcgaggacgtgccccggctggtcgccatggagatgcaggtccccgacatctccaac
gccgggaccaacgcgcccgtcgtcctcaccatccccaccgtgaagatcaccccgcccatg
gtcacccggctcggcgaggtgctcagccaccaccggggcgacaccgaggtgcgcatcaag
ctccagggcccccgcaagaccacggtgctccggctcgaccggcaccgggtcaaggccgac
tcggccctcttcggcgacctgaaggtgctgctcggcccggcctgcctggccggctga
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integrated database retrieval system
