Streptococcus thermophilus MN-ZLW-002: Y1U_C1608
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Entry
Y1U_C1608 CDS
T02116
Name
(GenBank) Exodeoxyribonuclease V
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
stw
Streptococcus thermophilus MN-ZLW-002
Brite
KEGG Orthology (KO) [BR:
stw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stw03400
]
Y1U_C1608
Enzymes [BR:
stw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y1U_C1608
DNA repair and recombination proteins [BR:
stw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Y1U_C1608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
DEAD
ResIII
Med11
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFJ84057
LinkDB
All DBs
Position
complement(1562489..1566142)
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AA seq
1217 aa
AA seq
DB search
MLTKAFLSPAEIEERIAQEAASDKDRKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVER
ILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLTKHLGQAKTDEERAFLSDQIAKIGT
ADIGTMDAFTQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLF
QKLVRNFTGHSKTSKAFRDLVYDIYSFSQATADPEKWLRQNLLKGQIEAKPEQAKNELLD
GLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIIFLEGSLINDQTDMEDLLKQLL
TLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDILPM
LELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPEVAVSYRDRYHEVMVDEY
QDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENETEVLIYNS
DESSTSEDEEGPDQAISSGEISLVIKEIIKLHEQGVRFEDITLLAPNRNTYLDLMVSFEE
HGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAV
QADKGQFYDKLLAAHTKSGLHPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIY
NDRFYYDYVGGLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEV
TDLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLA
DLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSK
ETLTQQYGTDVENNRLPVALRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAI
GQVEVKAAVDADDLSNNRQTEEIERALTVLESVEKLNHLYAPAIDLPSVRTPSQLKTFYE
PIMDTEGVDIMDKKEGVQPLETASTFELPDFGQKTKVTGAAVGSATHELMQRLTLSDTVT
LQDLTQALSRVSASDQVKARVQLEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPAS
KEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttgactaaagcttttttaagtccagcagagattgaggaacgtattgcccaagaagca
gcttctgacaaggatcgtaagttaacaccagaacagattgaagctatttacagtaatggt
actaatattttggtatctgcctcagctggttcagggaaaacctttgtcatggttgagcgt
atccttgatatgattggacgtggcgttggtattgatcaactctttatctcaacctttacg
gtaaaagctgcaggtgagttaaaggagcgtctggaaaagcggctgacaaagcatttagga
caggctaagacggatgaggagcgggcatttctttcagaccagattgccaagattgggacg
gctgatattggaaccatggatgcctttacccagaaattggtcaatcagtatggctatctc
ctgggtgtgtcacctactttccgtatcatgacagaccttgctgagcagacgcttatgaaa
aatgaggtttatgctgatctcttcaatgattatatgcaaggaaaggatgcccaacttttt
caaaaattggtccgtaatttcactggacatagcaaaactagcaaggcttttcgtgattta
gtttacgatatttacagcttttctcaggctactgcagatcctgaaaaatggctacgtcaa
aatctcttgaaaggacagatcgaggctaagccagaacaggctaaaaatgagcttttagac
ggtcttaaagatggcttgttggctgatttcctagctttcttaagagaccatttaggtata
gctcagcgtgaatttgccaaggccaagtatctgaataatgtgtcagatgccattatcttt
cttgagggctccttgattaatgaccaaactgatatggaggacctcctcaaacaactattg
actctgtcaggaggtactggtttgaccaatatgacccgtcctaaagacgaggaactcaag
gcctacaaggaagcatacaacaagaccaaaaatgagtttgtggctcagttgcgagaggtc
gatactcagctcaccgttctggaggttttgaccaagcataatgatgatatcctacctatg
ttggagctacttcagtcctttgtacttgatttttcggatcagtatttacaggcaaagatt
caggaaaatacctttgaattctcggatattgcccactttgctatccgtattttggaagaa
aatccagaggtggcagtcagctaccgggaccgttaccatgaagttatggtggatgagtat
caggacaatagccatactcaagaacgaatgttggaacttctatctaacggccataaccga
ttcatggtgggagatatcaagcagtccatttatcgtttccgtcaggcagaccctcagatt
tttaatgataagtttcagcttttccttgaaaatcctgatgcaggtaagctgattctcctt
aaggagaactttcgtagtcaatctgaagtccttgatgcgacaaatggtgtttttagccac
ctcatggatcaggaaatcggggacatcctatatgacaagactcatatgttggtagcaggt
agtcagaagcaaaaagagccccatcctgaaaatgaaactgaggttctgatttataatagt
gatgaatctagtacgagtgaggatgaagaaggtcctgatcaagctatcagcagcggtgag
atttccttggttatcaaagaaattatcaaacttcatgagcagggtgtacgttttgaggac
atcaccctcctagcaccgaaccgtaacacctatctggacttgatggtaagtttcgaggaa
cacgggattcccttggttcctgacgagtataagtcaagctacctagagtcactagaagtt
atgattatgttggacacccttcgtgctatcaataatcctcttaacgattatgctctcgtt
gctctccttcgttcacctatgtttaacttcaacgaggatgacctgactcgtatcgcagtt
caggctgacaaaggccaattctatgataagcttcttgcagctcataccaaatcaggtctt
catccggaagttgtgatgcaaggacttgatgccaagttgactctcttcacagagactctg
gcagattggcgtgactacagtaagtgtcattcgatttatgacctcatttggaagatttac
aacgaccgtttctattatgattacgtcggaggtcttccacgagctgagcaacgccaggcc
aatctttatgcccttgccttgcgtgctaatgcttatgaaaagacaggatttaaggggctt
tctcgttttattggcatgattgataagattattgctagcggtaacgacctagaggaagtg
acagatttggttcccaaaaatgccgttagcctcatgaccattcacaagtccaaggggtta
gagttcaagtatgtctttgtcctgcagatgaatcgcaagttcattggtcacagcaaggat
ggcctgagcggtaagtatattatcaatcgtgaaaaagggcttggtattaagtatctagct
gacctcaaagaccagataaacaccaatttgcctaagttaaatgttgttcttgagaccttg
accttccaggaaaatcgtagggaagagcgcagggcaagtatttcagaagagatgcgtcta
ctctatgtggcaatgacacgtgcagagaagaaactctacctagttggtaagggaagtaag
gaaaccttaacccagcagtatggcactgatgtcgaaaataatcgcctaccagtggctcta
cgtgaccagattgctacttatcaggattggattatggcacttgatactgcttttatgaga
aaggacctcaagtttactgttcgctttgttgaggatgaggagttgacgccagaggctatt
ggacaggttgaagtcaaggcagcagtagatgccgatgatttatctaacaatcgtcagacg
gaggagattgagcgtgccttgactgtcttagaaagtgttgaaaaactcaaccacctttat
gcaccagcgattgacctaccttctgtgcgtaccccaagccagctcaagaccttttacgaa
ccaattatggatacagagggcgtagatatcatggataagaaagagggagtgcaacctctt
gagacggctagcacttttgagctaccagactttgggcaaaaaactaaggtcactggagct
gcagttggttcagcaacccatgaactcatgcaacgcttgactctttctgatacagtgact
ctccaagatttgactcaggcactgagtcgggtatcggcatctgatcaagtcaaggcgcgt
gttcagttagaaaaacttttaggcttctttgatacagagctcgggaagcttattttggcc
aaccgtgataagttgcgtcgtgaagcaccatttgctatgttggcagaagatcccgctagt
aaagaagactttgtcgtccgtggtatcatcgatggctaccttcttcttgaagaccgtatt
gtcctctttgactataagacggaccgcttcactcatcctagtgaacttaaggaacgttac
aaagggcaaatgagcctctatgctaaagcactcagccaagcctatcaaatagataagatt
gataaataccttattctcctaggtggaaaagacttggaagtcgtagaagtataa
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