Salmonella enterica subsp. enterica serovar Typhi CT18: STY3461
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Entry
STY3461 CDS
T00064
Name
(GenBank) ATP-dependent RNA helicase (dead-box protein)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sty
Salmonella enterica subsp. enterica serovar Typhi CT18
Pathway
sty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STY3461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sty03019
]
STY3461
03009 Ribosome biogenesis [BR:
sty03009
]
STY3461
Enzymes [BR:
sty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STY3461
Messenger RNA biogenesis [BR:
sty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STY3461
Ribosome biogenesis [BR:
sty03009
]
Prokaryotic type
rRNA helicases
STY3461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
CAD07800
UniProt:
Q8Z3I1
LinkDB
All DBs
Position
complement(3301996..3303936)
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AA seq
646 aa
AA seq
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MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKIQPSAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREERPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERR
EGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcccttaccgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcgccaacc
cgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacacatgcgcggc
gtaaacgtggttgccctgtacggcggtcagcgttatgacgtgcagttacgcgccctgcgt
caggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcacttaaaacgcggc
accctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaaatgctgcgt
atgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggtcatcaaacc
gctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgctttatgaaa
gagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagc
tactggactgtctggggtatgcgtaaaaacgaagcactggtgcgtttcctggaagcggaa
gactttgatgcggcgattatcttcgtacgtaccaaaaacgcgaccctggaagtagcagaa
gcgctggaacgtaacggctacaacagcgccgcgttgaatggcgatatgaaccaggcgctg
cgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatcgccaccgat
gttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactacgatattccg
atggactccgagtcctacgttcaccgtatcggtcgtaccggtcgtgcgggtcgcgccggt
cgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaacgcacc
atgaagctgaccattccagaagtggaactgccgaacgcagaactgctgggtaaacgccgt
ctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctggatcagtac
cgtgcgctgctggcgaaaatccagccgtctgccgaaggtgaagagctggatctcgaaacg
ctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgattctgccgccggat
gcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccgcgcgatcgt
aatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaagttcgtcat
atcgtgggcgctatcgctaacgaaggcgacattagcagccgttacattggtaacattaag
ctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaagtgctccag
cacttcacgcgtactcgcattctgaacaagccgatgaatatgcagctgttgggtgatgcg
gttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggcgaacgtcgt
gaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgatggtcgtcgc
ttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctaccggtcgccgt
cgtttcggcggtgatgcgtaa
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