Streptomyces sp. YIM 121038: C9F11_27455
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Entry
C9F11_27455 CDS
T11066
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
styi Streptomyces sp. YIM 121038
Pathway
styi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
styi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C9F11_27455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
styi03400
]
C9F11_27455
Enzymes [BR:
styi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C9F11_27455
DNA repair and recombination proteins [BR:
styi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C9F11_27455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QCX79094
UniProt:
A0A5B7UZC2
LinkDB
All DBs
Position
complement(6398180..6399076)
Genome browser
AA seq
298 aa
AA seq
DB search
MTPITEVEGRRLALSNLDKVLYPASGFTKGEVLHYYATAADVLLPELRDRPVSFLRFPDG
PEGQLFFTKNVLPGTPAWVRTAEVPRSEGPARQILVQDLPTLMWAANLVTEFHTPQWRAH
APGLADRLVLDLDPGPPATVVEACRVALWLRERLVADGFSVYVKTSGSKGLHVVVPLVPV
ASARVSAYAKELAVAAERALPALVVHRMTRSLRPGKVFVDFSQNAAAKTTATAYTVRARG
EPTVSAPLAWGEVERCGGVGDAGLLVFRAPDMAARLRREGDLFAGVREPGRAGLLPGA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccatcacggaggtggaggggcgacggctggcgctcagcaacctcgacaaggtg
ctgtacccggcgagcggcttcacgaagggtgaggtcctgcactactacgcgaccgccgcg
gacgtgctgctccccgagctgcgcgaccggccggtgtcgttcctccgcttcccggacggg
cccgaggggcagctcttcttcaccaagaacgtgctgcccggtacgcccgcctgggtgcgg
acggccgaggtgccgcggtccgaggggcccgcgcggcagatcctcgtacaggacctgccg
acgctgatgtgggcggcgaacctggtgacggagttccacacaccgcagtggcgggcgcac
gcgccggggctcgctgaccggctcgtgctcgacctcgaccccgggccgcccgcgaccgtg
gtggaggcgtgccgggtggcgctgtggctgcgggagcggctggtcgccgacgggttctcg
gtgtacgtgaagacgtcggggagcaaggggctgcacgtggtcgtgccgctggtgccggtc
gcgtccgcgcgggtctcggcgtacgcgaaggagctcgcggtggcggcggagcgggcgctg
cccgcgctcgtggtgcaccggatgacgcggagcctgcggccggggaaggtgttcgtggac
ttcagtcagaacgcggcggcgaagacgacggcgacggcgtacacggtgcgggcgcggggg
gagcccacggtgtcggcgcccctggcctggggggaggtggagcgctgcgggggcgtcggg
gacgcggggctgctcgtctttcgggcgccggacatggctgcccggctgcggcgggagggt
gacctgttcgcgggggtgcgggagcccggccgggcgggcctgctgcccggcgcctga
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