Streptococcus pyogenes Alab49 (serotype M53): SPYALAB49_000007
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Entry
SPYALAB49_000007 CDS
T02019
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stz
Streptococcus pyogenes Alab49 (serotype M53)
Pathway
stz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPYALAB49_000007 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stz03400
]
SPYALAB49_000007 (mfd)
Enzymes [BR:
stz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPYALAB49_000007 (mfd)
DNA repair and recombination proteins [BR:
stz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPYALAB49_000007 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_22
adh_short
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEQ23664
LinkDB
All DBs
Position
5323..8742
Genome browser
AA seq
1139 aa
AA seq
DB search
MGLSGSSKALAIASAYLDDQKKIVVVTSTQNEVEKLASDLSSLLDEELVFQFFADDVAAA
EFIFASMDKALSRIETLQFLRNPKSQGVLIVSLSGLRTLLPNPDVFTKSQIQLTVGEDYD
SDTLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEITQELPYRLEFFGDDIDSIRQFHP
ETQKSFEQLEGVFINPASDLIFEASDFQRGIEQLEKALQTAQDDKKSYLEDVLAVSKNGF
KHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFDDFQKLVDKNARFDLEIANLLTEDLQQGK
ALSNLNYFADNYRELRHYKPATFFSNFHKGLGNIKFDQMHQLTQYAMQEFFNQFPLLIDE
IKRYQKNQTTVIVQVESQYAYERLEKSFQDYQFRLPLVSANQIVSRESQIVIGDISSGFY
FADEKLALITEHEIYHKKIKRRARRSNISNAERLKDYNELAVGDYVVHNVHGIGRFLGIE
TIQIQGIHRDYVTIQYQNSDRISLPIDQIGSLSKYVSADGKEPKINKLNDGRFQKTKQKV
ARQVEDIADDLLKLYAERSQQKGFSFSPDDDLQRAFDDDFTFVETEDQLRSIKEIKADME
SMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYP
VEVDVLSRFRSKKEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVK
HKETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVLENNPGL
VREAIIREMDRGGQIFYVYNKVDTIEKKVAELQELVPEASIGFVHGQMSEIQLENTLIDF
INGDYDVLVATTIIETGVDISNVNTLFIENADHMGLSTLYQLRGRVGRSNRIAYAYLMYR
PDKVLTEVSEKRLEAIKGFTELGSGFKIAMRDLSIRGAGNILGASQSGFIDSVGFEMYSQ
LLEQAIASKQGKTTVRQKGNTEINLQIDAYLPDDYIADERQKIDIYKRIREIQSREDYLN
LQDELIDRFGEYPDQVAYLLEIALLKHYMDNAFAELVERKNNQVIVRFEVTSLSYFLTQD
YFEALSKTHLKAKISEHQGKIDIVFDVRHQKDYRILEELMLFGERLSEIKIRKNNSVFK
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggggttatcgggttcaagtaaagcattggctatagcttccgcttatttagatgatcaa
aaaaaaatagttgtggttacatcaactcaaaatgaggttgaaaaattagccagcgattta
tctagtttacttgatgaagaacttgttttccaattttttgcagacgatgtggctgcagcg
gaatttatctttgcgtcaatggataaagctctatcaagaatagaaaccctgcaattttta
aggaatcctaaatctcagggcgttttaattgttagtttatcaggcttaagaactttattg
ccaaacccagatgtttttacaaagagtcagattcaactaacagttggagaagattatgat
agtgatactcttactaaacaactgatgacaattggctatcagaaggtctcacaggtcatt
agtccgggagaatttagccgtcgaggggatattttagatatctatgagattacacaagaa
ttgccttatcgattggaattttttggcgatgatattgatagtattaggcaatttcatcca
gaaactcaaaaatcttttgaacaactagaaggtgtttttattaatccagcaagtgatctt
atttttgaggctagtgattttcaacgtggcattgagcaattagaaaaggctctacaaaca
gcacaagatgataaaaaatcttatttagaagatgtattagctgtttcaaaaaacggtttt
aaacataaggatatccgtaaatttcaatcattattttacgaaaaagagtggtcattatta
gattatattcctaagggaacgccaatcttttttgatgattttcaaaaactagttgataaa
aatgcaagatttgatttagagattgctaatctcttgacagaagatttacagcaaggaaag
gctctttccaatcttaactactttgcagataattatcgagagcttaggcactataagccc
gcgaccttcttttcaaattttcataagggacttggaaatatcaaatttgatcagatgcat
cagctaactcagtatgccatgcaggaattttttaatcaatttcctttgttgattgatgag
attaaacggtatcaaaaaaatcaaacaacggttattgtacaggtagagtctcagtatgct
tacgaacgacttgaaaagtcttttcaagattaccaatttcgccttcctttagtgagtgct
aatcaaattgtttcacgtgaatcacaaattgtaattggagatatctccagtggtttttat
tttgctgatgaaaagttagcgttgatcacagagcatgaaatttatcataaaaagatcaaa
cgacgcgctagacgatctaatattagcaatgctgagcgtttgaaagattacaatgagtta
gcagtaggtgattacgtggttcataatgtccatggtatcggtcgctttcttggaattgaa
acgattcagattcagggaatccatcgagattacgttactattcaatatcaaaattcagac
cgtatttctcttccaattgaccaaattggtagcttatcaaagtacgtttctgctgatgga
aaagaacctaaaattaataaactcaatgatggtcgttttcaaaagacaaagcaaaaggtc
gctagacaagtagaggatattgctgatgaccttctaaaattatatgctgaaagaagtcag
caaaaaggattttcattttcaccagatgatgacttgcagcgcgcttttgatgatgatttt
acttttgtagaaacagaagatcaacttaggtctataaaggaaattaaagctgatatggag
agcatgcaacctatggatcgtcttttagtaggcgatgtaggatttggtaagacagaagta
gctatgagggcagcctttaaagcggtgaatgatcacaaacaagtagctgtcttagttcca
accacagtcttggcccagcagcattatgaaaacttcaaagcacgctttgaaaattaccct
gttgaggttgacgtcttaagtcgtttccgtagtaaaaaagagcaagctgaaacactagaa
cgtgtacgaaaaggtcaaattgacattattatcggaacccatcgactcctatcaaaagat
gtggtcttttctgatttaggattgattgtgattgatgaggaacaacggtttggtgttaag
cataaagaaactttaaaggaattaaaaactaaggttgacgtcttaaccttaacagctact
ccgattcctagaaccttacacatgtctatgttaggtatccgagatttatcggttattgag
accccaccaaccaatcgttatcctgttcaaacgtatgttttggaaaataatccaggtctc
gttagagaagctatcattcgtgaaatggatcgtggaggacaaattttttacgtttacaat
aaagttgacactattgaaaagaaagttgcagagctacaagaattagtcccagaagcttct
ataggttttgttcatgggcaaatgagtgaaattcaacttgaaaataccttgattgacttt
ataaatggtgattatgatgtccttgtggctacaacgatcatcgaaacaggagttgacatt
tctaatgtaaacactttgtttattgagaatgctgatcatatgggattgtcaactttatat
caactgagggggcgcgtcggaagaagtaatcgtattgcctatgcttacctgatgtatcgt
cctgataaggtcctaacagaggtttctgaaaaacgtttagaggctattaaaggctttact
gaattaggttcaggctttaagattgctatgcgagatttgtctatacgaggagcaggtaat
attttaggagcttctcaaagtggctttattgattcggtcggttttgaaatgtattctcaa
ttattagaacaggctattgctagcaagcaaggaaaaacgactgttcgccaaaaaggtaat
actgaaatcaatcttcagattgatgcttatttaccagatgattatattgcagatgagcgc
caaaaaattgacatttacaagcgtattcgagaaattcaatcaagagaagattatctcaat
ttgcaagatgagctgatagatcgttttggagagtatcctgatcaagttgcctatttgtta
gagatagctctgctaaaacattatatggacaatgcctttgcggaattagttgaacgcaaa
aataatcaggtcattgttcgatttgaagtaacttctttaagttatttcttgactcaggat
tatttcgaagccttatcgaaaacccatcttaaagctaaaattagtgaacatcaggggaaa
atcgatatcgtctttgacgttcgccatcaaaaagattatagaattttagaagaattgatg
ttatttggagaaaggcttagtgagataaaaatcagaaaaaacaattcagtttttaaataa
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