Sulfurimonas autotrophica: Saut_0592
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Entry
Saut_0592 CDS
T01316
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sua
Sulfurimonas autotrophica
Pathway
sua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Saut_0592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sua03400
]
Saut_0592
Enzymes [BR:
sua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Saut_0592
DNA repair and recombination proteins [BR:
sua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Saut_0592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
IstB_IS21
NEPRO_N
Motif
Other DBs
NCBI-ProteinID:
ADN08641
UniProt:
E0UPP9
LinkDB
All DBs
Position
573084..576077
Genome browser
AA seq
997 aa
AA seq
DB search
MSQAILFNHFSKNETKEEVELLLCEDAKEAYELENVAKFFQHDVIVFPDFRPSYGDDLRS
YKEELHELFFALRTYHSAQKKPLIISPLKTLLFHLPKKELLGTTTLEFGAEINLKEFKQL
MIHWGYTFVDMVQVEGEISHRGDIIDIFVPSSNNPIRISLFDNEVEQIKEFELESQRTLG
DDLEALEIRSAFYSLNESAYNELNQKIQNSEFDALNKDVASLGFWHLDDMAENFLENKNV
KLVRNLDNLLKDAYGINNPRLPRDAFDLDVLEENDEVKELVVANVAQLLKVHQDKKVTLI
AANNATVKQAGIYDTTNMTIIQAPYILNILTPDELVVSLNKADKKRRRRKTSILLDDLKA
GDYVVHEDYGVGIFEKIEQTEILGGIKDFIVIKYVGDDKILLPVENLDFIDRYIAGGGAT
PVLDRLGKGSFGKLKAKVRKRLLEIAGQIVNTAAARALIKAPKISLGKKELQEFQALSGF
EYTEDQTQAVNEILNQMSSGHIMDRLLSGDVGFGKTEIALNTIYAACQSGYQSAFIVPTT
LLSAQHWRSLDERFKDLGIRYAKMDRFVSTKDKNAIIKGLASGEIDCVVGTHTLFGLEFK
KLGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKTMSQLLTPPS
ERQGVRTFVKEYDEKLIKEVILRELRRGGQVFYVHNSIDHMPIKLDELQALLPDLRMLML
HSKISAVETEKELLKFEAGEYDLMIATSIIESGIHMPRVNTIIVDGADRFGIADLHQLRG
RVGRGHSEGFAYFIVQNKENLTDEAKKRLLALESNSFLGSGSVLAHHDLEIRGGGNLVGD
AQSGHIKNIGYSLYLRMLEDAIKELSNTVEGERAKVDVKLTISAFISDEIVKEDRLRLDI
YRRLSQCENAVEIYEIEEEVIDRFGELDVPTKQFFELMVIKLLSLEKKIKTIANYGQNIT
FTYLNDSKETIKSDSRDDDDIIKATLYYLRNNKPKVL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaggcaattttatttaatcattttagtaagaatgaaacaaaagaagaagttgaa
cttttactatgtgaagatgcaaaagaagcatatgaacttgaaaatgtagcgaaatttttt
cagcatgatgttattgtctttcccgattttagaccaagttacggtgatgatttgcgttca
tacaaagaggagttgcatgaacttttttttgcactgagaacatatcactctgctcagaaa
aaaccgcttattatctctcctttaaaaacactgctctttcatctgcccaaaaaagagctt
ttaggcacaacaactctagaattcggtgccgagatcaatttaaaagagtttaagcaactg
atgattcactggggttatacttttgtggatatggtgcaggttgagggggaaatatctcat
cgtggagatatcatagatatttttgtcccttcatcaaataatccaataagaatttcactt
tttgataatgaagtagaacagattaaagaatttgaactcgaatcacaaagaacactcggg
gatgatttagaagcgctagaaatccgtagtgctttttactctttgaatgaaagtgcctat
aatgaacttaatcaaaaaatacaaaatagtgaatttgacgcattgaacaaagatgtggct
tctttaggcttttggcatcttgatgatatggcagagaattttttagagaataaaaatgtc
aagcttgtcagaaatctggacaacctgcttaaagatgcttacggcattaataatccccgt
cttccaagagatgcctttgacttggatgttttagaagaaaatgatgaggtaaaagagctt
gtcgtagccaatgtcgcacagcttttaaaagtgcatcaagacaaaaaagtgacgcttatc
gcggcgaataatgctactgtcaaacaagccggtatttatgatacgactaatatgacaatt
atacaagctccgtatatattaaatattcttacgcctgacgaacttgtggtatcgctcaat
aaagcagataaaaaacgacgtcgaagaaaaacttcgattcttttggatgatttaaaagcc
ggtgattatgttgtgcatgaagattacggtgtgggaatctttgaaaagatagagcagact
gaaattttaggcggcataaaagatttcatcgtcattaaatatgtaggtgatgacaaaata
ctgttgcctgtggaaaatttggactttattgaccgttatattgccggaggcggtgcaaca
cctgtccttgacagactcggaaaaggcagcttcggtaagctcaaagcgaaagtgcgaaaa
agactgcttgaaattgcaggtcagatagtaaataccgcagcagcaagggctctcattaaa
gcaccaaaaatttctttgggtaaaaaagagttgcaggagtttcaagcactttcgggtttt
gaatatacagaagaccaaacgcaggcggtcaatgaaattttgaaccaaatgagttcaggt
catattatggacagactcctcagcggagatgtcggttttggaaagacagaaattgcactc
aacacaatttatgcagcatgtcagtcaggctatcagtcggcatttattgttcctacaaca
ctactttcagcgcagcactggcgctctttggatgagcggtttaaagacttgggcatacgt
tatgcaaaaatggacagatttgtaagtaccaaagataaaaatgcgattataaaaggtttg
gcaagcggtgaaatagactgtgttgtaggaacacacacactctttggacttgaatttaaa
aagctcggcgtggtaattatagatgaagaacataagtttggggtcaaacaaaaagagaaa
ataaaagagctgtatcataatgtgcatctgctctctatgagtgcaacgccgattccgcgt
tcacttaatcaggcactgagctccataaaaactatgagtcagcttttaacacctccaagc
gaacgtcaaggtgtgagaacttttgtaaaagagtatgatgaaaagctgataaaagaggtc
atactgcgagaactacgccgcggcgggcaggttttttatgtgcataattcgattgatcat
atgcctataaaactggatgagcttcaagcactcttgccggatttaagaatgcttatgttg
cattcaaaaatatcagctgtagagactgaaaaagaactgttaaaatttgaagcgggcgag
tatgatttaatgatagccacttccattattgagagcgggattcatatgcctcgcgtcaat
accatcattgtagacggtgcggacagattcggtatagctgatctgcatcagcttcgaggg
cgtgtcggtcgtggacacagtgaaggttttgcttatttcatcgtacaaaacaaagaaaac
ctcacagatgaggcaaaaaaacgacttttggcattggaatcaaactcatttttgggctca
gggtctgtgcttgcacatcatgatttggaaattcgtggcggagggaatcttgtcggcgat
gcacaaagcggacatattaaaaatataggctactctttgtatctgcgaatgcttgaagat
gccataaaagagctgagcaatacggtagagggagagcgggcaaaagtagatgttaaactt
actatctctgcttttatcagtgatgaaattgtcaaagaagacagactgcgtttagatatt
tatagaagactctcacagtgtgaaaatgctgtagaaatttatgaaattgaagaagaagta
attgaccgtttcggcgagctggatgttcctacaaaacagttttttgaacttatggttatt
aagcttttgtcactagagaaaaaaatcaaaaccatagcaaactatggacaaaatattaca
ttcacctatttaaatgattctaaagagactataaagtcagattcaagagatgatgatgat
attattaaagcaacgctttattatttaagaaataacaaaccaaaagttctctag
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