Sulfitobacter albidus: KDD17_06630
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Entry
KDD17_06630 CDS
T09114
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sual
Sulfitobacter albidus
Pathway
sual03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sual00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDD17_06630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sual03400
]
KDD17_06630 (mfd)
Enzymes [BR:
sual01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDD17_06630 (mfd)
DNA repair and recombination proteins [BR:
sual03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDD17_06630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
Cas3-like_C_2
AAA_30
MFD_D3
AAA_16
SecA_DEAD
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUJ77634
UniProt:
A0A975JFM1
LinkDB
All DBs
Position
1:1400397..1403888
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AA seq
1163 aa
AA seq
DB search
MTDPAHITVSGAPEGFDAQLILNEIARADGPVIHVARDDKRMAAIESALRFFAPDMPVVR
FPGWDCLPYDRVSPNADISAQRMATLAGLVHGMPARYVLLTTLGAATQRLPARDVLRDAA
FRARVGDRIDERGLREFLVRMGFVQSPTVMEPGDYAVRGGIMDIYPPGDLGPVRLDMFGD
VLDGARRFDAATQRTTEKLDQIELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWLAFFYETLETLFDYLPGVPVTLDDQVTPVRLARWESVADQYETRKIA
MSARGRMDSVYKPAPAGGLYLDDAAWEAAVAGHRVIQLAPLPQATGPGVTDAGGRIGRNF
APERQQESISLFGALAKHVKTKLADGSVVIASYSDGARERLSGLIEDEGLAEAIPIPDAT
RLGKRGLHLVVWPLEHGFEAPWRDGKITVISEQDVLGDRLIRRPKRKRRAENFLSEVQSL
TPGDLVVHVDHGIGRYLGMEVVTAAGAAHECLLLEYAENSKLYLPVENIELLSKYGHEEG
LLDKLGGGAWQSKKARLKERIREMADKLIRIAAERALRKAPVLEPPPGMWDAFSARFPYQ
ETDDQLSAIGDVIDDLTSGNPMDRLVVGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTL
LARQHYKSFADRFRGFPLEVRQLSRFVTAKDAAATRDGITKGTVDIVVGTHALLAKSIKF
KNLGLLVIDEEQHFGVTHKERLKSLRTDVHVLTLTATPIPRTLQLSLTGVRDLSIIGTPP
VDRLSIRTYVSEFDVVTLREALLREHYRGGQSFYVVPRISDLPEIEAFLKDQLPELSYVV
AHGQMAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIR
GRVGRSKTRAYAYLTTKPRAKLTATAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLG
EEQSGQMRDVGFELYQSMLEEAIAKIKSGELQGLTDDDGQWAPQINLGVPVLIPEDYVPD
LDVRLGLYRRLSELTRKVELEGFAAELIDRFGPLPREVNTLMLVVRIKAMCKRAGIAKLD
GGPKGAVVQFHNDKFASPEGLVQFMHAQKGQAKVKDNRIVVARDWKTDTDKIKGAFAIAR
DLAEHVVAREKAARKRAATAPSG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcccgcccatatcaccgtttccggcgcgcccgaagggtttgacgcacagctg
atcctgaatgaaatcgcgcgcgcggacggccccgtgatccacgtggcgcgcgacgacaaa
cgcatggccgcgattgagagcgcgctgcgctttttcgcgcccgacatgccggtcgtgcgc
tttccgggctgggattgcctgccgtacgaccgggtatcgcccaacgccgatatctcggcg
cagcgcatggcgacactggcggggttggtgcacgggatgcccgcgcgctacgtgctgctg
acaacgctgggggcggcgacgcaacgtctgcccgcccgcgatgtgctgcgcgacgccgcg
ttccgcgcgcgcgtgggcgaccggatcgacgagcggggcctgcgtgaatttctggtacgc
atgggctttgtgcaaagccccacggtgatggagccgggcgactacgccgtgcgcggtggc
atcatggacatctacccgcccggcgatctggggccggtacggctggatatgttcggcgat
gtgctcgacggcgcgcgccgctttgatgcagcgacccagcgcaccaccgaaaagctggac
cagatcgagctcgcgccggtgagcgaggtcatcctcgatgaggcggcgatcacgcggttt
cgccagaactaccgcatcgaatttggtgcggcgggcaccgatgatccgctttacgaggcg
atttcggcggggcgcaaacatcagggcgccgagcattggctggcgttcttctatgaaacg
ctggaaacgctgtttgactatctgcccggcgtgcccgtcaccctcgacgatcaggtcacg
cccgtgcggctggcgcgctgggaaagcgtggcggaccaatacgagacgcgcaagatcgcg
atgtccgcgcgcgggcgcatggacagcgtgtacaaacccgcacctgccggggggctttat
ctggacgacgccgcgtgggaggccgccgtggccgggcaccgcgtgatccagctggcgcca
ctgcctcaggccacagggccgggggtgacggatgcgggcgggcgcatcgggcgaaacttt
gcccccgaacgccagcaggaatccatcagccttttcggggctttggccaaacatgttaag
accaagcttgcggatggctccgtcgtcatcgccagctattccgacggcgcgcgcgagcgt
ttgagcgggctcatcgaggacgaagggctggccgaggcgatcccgatccccgacgccaca
cggctgggcaaacgcggcctgcatctggtcgtctggccgttggagcacgggttcgaagcg
ccgtggcgggacggcaagatcaccgtcatctcggaacaggatgtgctgggtgacaggctg
atccgccgcccgaaacgcaagcggcgtgcggagaatttcctgagcgaggtgcagagcctc
acgcccggcgatctggtggtgcacgtcgatcacggcatcgggcgctatctgggcatggag
gtggtgaccgccgcaggtgcggcacacgaatgtctgctgctcgaatacgccgagaattca
aagctgtacctgccggtcgagaatatcgaactgttgagcaaatacggccacgaggagggc
ctgctcgacaaattgggcgggggcgcgtggcaatccaagaaggccaggctcaaggaacgc
atccgcgagatggccgacaagcttattcgcatcgctgccgagcgcgcgctgcgaaaggcg
ccggtgctggagccgccgccgggcatgtgggacgcgttctcggcgcgcttcccctatcag
gaaaccgacgatcaattgagcgccatcggcgacgtgatcgacgatctgacctcgggcaat
ccgatggaccgtctggtggtcggagacgtcggtttcggcaagaccgaagtcgcgatgcgc
gcggcctttgtcgccgccatgtcgggcgtgcaggtggcggtgatcgcccccaccacgctg
ctggcgcggcaacactacaaatccttcgccgaccggtttcgcggtttcccactagaagtg
cgccagctgagccgctttgtcaccgcgaaggatgccgccgccacccgcgacggcatcacc
aagggcaccgtcgatatcgtcgtgggcacccacgcgctgctggcaaaatccatcaagttc
aagaacctcggcctactggtcatcgacgaggagcagcatttcggcgtcacccacaaggaa
cgcctgaaatccctgcgcacggatgtgcatgtgctgaccctcacggcgacgccgataccg
cgcacgctgcaactcagcctcaccggcgtgcgcgatctgagcatcatcggcacgccgccc
gtcgaccggctgagcatccgcacctatgtgtcggaattcgacgtagtcaccctgcgcgag
gcgcttttgcgcgagcattaccggggcgggcagtcgttctacgtggtgccgcggatcagc
gatctgccggagatcgaagccttcctgaaggatcagctgcccgagctgagctatgtcgtg
gcgcacgggcagatggcggcgggtgagctcgatgaccgcatgaacgccttttacgacggg
aaattcgacattctgctggccacgacgattgtggaatccggtctcgatattcccacggcg
aacacgatgatcgtgcaccgggcggatatgttcgggcttgcccagctttaccagatccgg
ggccgggtggggcgctcgaaaacgcgcgcctacgcgtatctgacgaccaaacctcgcgcc
aagctgacggcaacggctgaaaaacgcctgcgcgtgttgggcagtctcgacacgctgggg
gcggggttcacgctggcctcgcaggatctggacattcgcggcgcgggcaacctgctgggc
gaggagcagtcgggccagatgcgcgacgtggggtttgagctgtatcaatccatgctcgag
gaggcgattgccaagatcaaatcgggcgagcttcagggcctcacggacgacgacgggcaa
tgggcgccgcagatcaatctgggcgtgcccgtgctgatcccggaggactacgtgcccgac
cttgacgtgcggctgggcctctaccgccgcctgtcagagcttacgcgcaaggtcgagctg
gaaggatttgccgccgagctgatcgaccgctttggcccgctgccgcgcgaggtcaacacg
ctgatgctggtggtgcggatcaaggcgatgtgcaaacgcgcaggcatcgccaaactggac
ggcggccccaagggcgcggtcgtgcagtttcacaatgataaattcgcctctcccgaggga
ttggtgcagttcatgcacgcgcaaaagggtcaggcaaaggtcaaggacaacagaatcgtc
gttgcgcgcgattggaaaaccgacacggacaagatcaagggcgcgttcgccatcgcgcgc
gatctggcggaacacgtcgttgcccgggagaaagcggccaggaaacgggccgctaccgca
ccgtccggctga
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