Streptococcus uberis: SUB0007
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Entry
SUB0007 CDS
T00849
Symbol
trcF
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sub
Streptococcus uberis
Pathway
sub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SUB0007 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sub03400
]
SUB0007 (trcF)
Enzymes [BR:
sub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SUB0007 (trcF)
DNA repair and recombination proteins [BR:
sub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SUB0007 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
AAA_7
Motif
Other DBs
NCBI-ProteinID:
CAR40328
UniProt:
B9DSP3
LinkDB
All DBs
Position
5285..8785
Genome browser
AA seq
1166 aa
AA seq
DB search
MDILELFSQSQIAQSWYSGSMTLGRQLLMGLSGSSKALAIAANFESQDEKLVVVTSSQNE
SEKLASDLSAILGEEYIYQFFSDDVAAAEFIFSSLDKTISRVEAIKFLLDDTEKGILITS
IVGLRVLLPSPKTFLTSYLSLSIGNEYNLDTIVKQLTTMGYHKVSQVLHPGEYSKRGDIL
DVYEITKENPYRIEFFGDEVDGIREFNLDTQLSLSTVNEIEISPASDLILEKNDFIRGIN
NLEKAYKVANDDLKKYLSEIISVSKNDYCHKDIRKFISLFYQDKWTLMDYITKGVPIFFD
DFQKILDKNAKFDLEIANLLTDDLQSSKAIPSLSYFDDNYKKIRNYKPATFFSNFHKGLG
NIKFDKIHQFTQYSMQEFFSQFPLLIDEISRYQKSKSTVIIQVESQHAYDRLMKNFSEYH
FSAPLVSSNELQRQKIQIVIGSLSSGFYLADEKIAYITEREIYHKKIKRKVRKSNISNAE
RLKDYNELVKGDYVVHNVHGIGKFLGIETIQIHGIHRDYVTIQYQNSDTISLPVEQIESL
SKYVSADGKEPKINKLNDGRFQKTKQKVAKQVEDIADDLLKLYAERSQQKGFSFSADDDL
QKSFDDDFPYVETEDQIRSIIEIKQDMESNHPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAILVPTTVLAQQHFENFKERFENYPIEIDVLSRFRSKKEQGDTLEKLKKGQVDIIIG
THRLLSKDVQFSDLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLETNPGLVREAIIREMDRGGQCFYVYNKVDSIDKKVSEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFVENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEDAIAKRQGKTFVRQKGNSEINLQIDAYLP
QNYMSDERQKIEIYKRIREIDDREDYLQLQDEIIDRFGEYPDQVAYLLEIGLLKSYMDQA
FVELVERKDKIITIKFEKASLKYYFTQDYFEALSKTNLKAKIAENNGKIDIIFDIRNKKD
HEILEELMLFGEMLSDIKKRKNIESN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaactttttagtcaaagtcaaatagcacaatcttggtattctggtagc
atgacacttggtagacaattattaatgggattatcaggatcaagtaaagcattagcaatt
gcagcaaattttgaaagtcaagatgagaagttagtggtagtaacttccagtcaaaatgag
tctgaaaaattggcatcagatttatcagcaatattaggagaagaatacatttaccaattt
ttttcagatgatgtggcagcagctgaatttattttctcatccttagataaaaccatttca
cgagttgaggctataaaatttttattagatgatactgaaaaaggtattttaataactagt
attgtaggattaagagtactcttaccaagcccaaaaactttcttgacgagttatttatct
ttaagtattggaaatgaatataatcttgacacaattgtaaaacaattaacaactatggga
tatcataaagtttcacaagtacttcatccaggggagtatagtaaacgaggtgatatttta
gatgtatatgaaatcactaaagaaaacccttatcgtattgaattttttggagatgaagta
gatggaattagggaatttaaccttgacacacaattgtcactttctacagtgaatgaaatc
gaaattagtccagctagcgatcttattttagagaaaaacgattttattagaggtataaat
aatttagaaaaagcctataaagtagcaaatgatgacttaaaaaaatacctgtccgaaatt
atttcagtttccaaaaatgactattgtcataaggatattagaaaatttatttcattattt
tatcaagataaatggacattaatggattatatcactaaaggagttccaatattctttgat
gattttcaaaaaattctagataaaaatgccaaatttgatttagaaattgcaaatttattg
acagatgatttacagtcaagtaaagctattccttcactatcttattttgatgataattac
aaaaaaattagaaattataaacctgcaacattcttttcaaatttccataaaggtttagga
aatattaaatttgataaaattcatcaatttacacaatattcgatgcaggagttttttagt
caatttcctttattaattgatgaaatttcacgctatcaaaaatcgaaatctacagtaata
attcaagttgagtcacaacatgcctacgatagattaatgaaaaatttttcagaatatcat
ttttctgctccactagtatcgtcaaatgaattacaacgtcagaaaattcaaattgtaatt
ggaagtctttcatccggattttatcttgctgatgaaaaaatagcttacattactgaacgt
gaaatctatcataaaaaaataaaacgtaaagttagaaaatcgaatattagtaatgctgaa
agattaaaagattacaatgagctagttaaaggggactatgttgttcataatgttcatgga
attggtaaatttttaggaatagaaactattcagatccacggtattcatagagattatgtc
actattcaataccaaaattcagatacaatttctttaccagttgaacaaattgaatcacta
tctaaatatgtttctgcagatggaaaagagccgaaaattaataaacttaatgacggacgt
tttcaaaaaacaaaacaaaaagtagcaaaacaagttgaagatattgcagatgatttacta
aaattatatgctgagagaagtcaacaaaaaggattttccttctcagccgatgatgattta
caaaaatcctttgatgatgattttccttatgttgaaactgaagaccaaattcgttctatt
atagaaattaaacaggatatggaaagtaatcatcctatggatagactcctcgttggtgat
gttggatttggtaaaactgaagttgctatgagggcagcatttaaagctgtgaatgatcat
aaacaagtggcaattttggtccctactacagtattagctcaacaacattttgaaaatttt
aaagaaagatttgaaaactatcctattgagattgatgtattaagccgtttcagaagtaaa
aaagaacagggtgataccttagaaaaactaaaaaaaggacaagttgatattattattgga
acacatcgacttctttctaaagatgttcaattttcagatttgggcttgattgttattgat
gaagaacaaagatttggtgtaaaacataaagaaaaattaaaagaattaaaaacgaaagtt
gatgtcctcacactaacagcaactcctataccaagaacgcttcacatgtcaatgctagga
atacgcgatctatcagttattgaaaccccaccaacaaaccgctatcctgtccaaacttat
gtattggaaacgaatcctggtttagtaagagaagcaattataagagagatggatcgcggt
ggtcaatgtttttatgtttataataaagttgattctatcgataagaaggtttctgaactt
caagaacttgtaccagaggcttcaattggatttgttcatggacaaatgagtgaaattcaa
ttagaaaatacgttgattgattttattaatggtgattacgatgttttggttgctactaca
attattgagacaggtgtggatatctcaaatgttaatacgttatttgttgaaaacgccgat
catatgggattatcaacactgtatcaattaagaggtagagtgggacgatcaaatagaatt
gcctacgcttacttaatgtatagaccagataaggtattaactgaagtttctgaaaaacgt
ctggaagcaataaaaggttttactgaactggggtcaggttttaaaattgctatgagagat
ttatctattagaggagcaggaaatattttaggtgcatctcaaagtgggtttattgattca
gtaggttttgaaatgtattcacaattgttagaggatgctattgctaagagacaaggaaaa
acatttgtccgtcaaaaaggaaattctgaaataaacttgcaaattgatgcatatttgcct
caaaattatatgagtgacgagagacaaaaaattgaaatttataagcgtatcagagaaatt
gatgaccgagaagattatttacaacttcaagatgaaatcatagatagatttggagaatac
cctgatcaagtagcctatttgttagaaattggattacttaagtcttatatggaccaagca
tttgttgaattagtcgagagaaaagacaaaataattacaataaaatttgaaaaagcttcc
ttaaaatactactttactcaagactattttgaagcattgtcgaaaaccaacttaaaagct
aaaattgcagaaaataatggtaaaattgatatcatttttgatatcagaaataaaaaagac
catgagattttagaagaactcatgctgtttggagagatgcttagtgacattaaaaaacga
aaaaacattgaatctaattag
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