Streptococcus uberis: SUB1250
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Entry
SUB1250 CDS
T00849
Name
(GenBank) DEAD box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sub
Streptococcus uberis
Pathway
sub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SUB1250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sub03019
]
SUB1250
03009 Ribosome biogenesis [BR:
sub03009
]
SUB1250
Enzymes [BR:
sub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SUB1250
Messenger RNA biogenesis [BR:
sub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SUB1250
Ribosome biogenesis [BR:
sub03009
]
Prokaryotic type
rRNA helicases
SUB1250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF1924
Motif
Other DBs
NCBI-ProteinID:
CAR42728
UniProt:
B9DUR3
LinkDB
All DBs
Position
complement(1236993..1238678)
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AA seq
561 aa
AA seq
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MDDKNIQAYKAASHCFFRKEKHLKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEG
KDVIGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGV
KVRSVYGGSSIDKQIKALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNM
GFLEDIEAIISRVPSERQTLLFSATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFY
VRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKR
LRVIRDFKGDQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGE
SITFVSPNEMGYLSMIENLTKKQMKPLKPATAEEAFQAKKKVALKKIERDFADEAIRSNF
DKFKADALKLASEFTPEELALYILSLTVQDPADLPEVEIAREKPLPFKYVGGGHGGGKKG
NKGGRGRDNRGRGGRDNDRRGGGYRGKRDDKREGRYRDKRDDNGGNRDFKRKPKRNANDF
FNKEKKSSQKDSGFVIRHKGE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggacgacaagaatatacaggcttataaggcagcttcgcactgcttttttagaaaagag
aaacatttgaaatttacagaatttaacttatcagaagacatccaatcagctgttgtaaca
gcaggttttgaaaaagcatctccaattcaagagatgacgattccattagcattagaaggt
aaagatgtcattggtcaagctcaaacaggtactggtaaaacagccgcatttggactacca
accttgaataagatccgtacggatgagaacattatccaagcactcgttattgctccaact
cgtgaacttgctgttcagagtcaagaagaacttttccgttttggtcgagacaaaggtgtt
aaagttcgttccgtttatggcggatcaagtattgataaacaaattaaagcccttaaatca
ggcgctcatattgttgttggtacaccaggtcgtttattagatttgattaaacgtaaagca
ttaaaacttgatcatgttgaaacattaattttagacgaagctgatgaaatgcttaacatg
ggctttttagaggatattgaagcgattattagtcgcgttccttcagaacgtcaaacttta
ctattttctgcaactatgccagctcctatcaaagaaattggcgttaagtttatgaaaaat
ccagaacatgttcaaattaaaaataaagaattaacaaacgttaacgttgaacagttttat
gttcgtgttaaagaacaagaaaaatttgataccatgacgcgcttgatggacgttgatcag
ccagaactttcaattgtttttggtcgtacaaagcgtcgcgttgatgaaatcacacgtggt
ttgaaattgcgtggtttccgggcagaaggtattcatggggaccttgatcagaataaacgt
ttacgtgttattcgcgatttcaaaggcgaccaaattgatatcttagttgccactgacgtt
gctgcgcgtggtcttgatatttcaggtgtaacacatgtctataactatgacattacacaa
gaccctgaaagctatgttcaccgaattggacgtactggtcgtgcgggtaaaactggtgag
tcaattacattcgtttcaccaaatgagatgggttacttatccatgattgagaacctaacc
aagaaacaaatgaaaccattaaaacctgcaactgctgaggaagccttccaagctaagaaa
aaagttgctttgaaaaaaattgaacgtgattttgcggatgaagctattcgttcaaatttt
gataaattcaaggcggacgctttaaaattagcttctgaatttacgccagaagaattagcc
ttatatatcttgagcttaactgtccaagacccggctgatttacctgaagttgaaattgct
cgtgagaaaccattgccgtttaaatatgtcggtggtggccatggtggtggtaaaaagggt
aataaaggcggacgtggtagagataatcgtggacgtggtggtcgtgacaacgatcgtcgc
ggtggtggttatcgaggtaagcgtgatgataaacgtgaagggcgttacagagataaacgt
gacgacaacggcggtaaccgtgattttaaacgcaaaccaaaacgtaatgccaatgacttt
ttcaacaaagagaaaaagtcatcacaaaaggactctggatttgtcatcagacacaaaggg
gaataa
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