KEGG   Streptococcus uberis: SUB1250
Entry
SUB1250           CDS       T00849                                 
Name
(GenBank) DEAD box helicase family protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
sub  Streptococcus uberis
Pathway
sub03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sub00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SUB1250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sub03019]
    SUB1250
   03009 Ribosome biogenesis [BR:sub03009]
    SUB1250
Enzymes [BR:sub01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SUB1250
Messenger RNA biogenesis [BR:sub03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SUB1250
Ribosome biogenesis [BR:sub03009]
 Prokaryotic type
  rRNA helicases
   SUB1250
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Helicase_RecD DUF1924
Other DBs
NCBI-ProteinID: CAR42728
UniProt: B9DUR3
LinkDB
Position
complement(1236993..1238678)
AA seq 561 aa
MDDKNIQAYKAASHCFFRKEKHLKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEG
KDVIGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPTRELAVQSQEELFRFGRDKGV
KVRSVYGGSSIDKQIKALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNM
GFLEDIEAIISRVPSERQTLLFSATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFY
VRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKR
LRVIRDFKGDQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGE
SITFVSPNEMGYLSMIENLTKKQMKPLKPATAEEAFQAKKKVALKKIERDFADEAIRSNF
DKFKADALKLASEFTPEELALYILSLTVQDPADLPEVEIAREKPLPFKYVGGGHGGGKKG
NKGGRGRDNRGRGGRDNDRRGGGYRGKRDDKREGRYRDKRDDNGGNRDFKRKPKRNANDF
FNKEKKSSQKDSGFVIRHKGE
NT seq 1686 nt   +upstreamnt  +downstreamnt
atggacgacaagaatatacaggcttataaggcagcttcgcactgcttttttagaaaagag
aaacatttgaaatttacagaatttaacttatcagaagacatccaatcagctgttgtaaca
gcaggttttgaaaaagcatctccaattcaagagatgacgattccattagcattagaaggt
aaagatgtcattggtcaagctcaaacaggtactggtaaaacagccgcatttggactacca
accttgaataagatccgtacggatgagaacattatccaagcactcgttattgctccaact
cgtgaacttgctgttcagagtcaagaagaacttttccgttttggtcgagacaaaggtgtt
aaagttcgttccgtttatggcggatcaagtattgataaacaaattaaagcccttaaatca
ggcgctcatattgttgttggtacaccaggtcgtttattagatttgattaaacgtaaagca
ttaaaacttgatcatgttgaaacattaattttagacgaagctgatgaaatgcttaacatg
ggctttttagaggatattgaagcgattattagtcgcgttccttcagaacgtcaaacttta
ctattttctgcaactatgccagctcctatcaaagaaattggcgttaagtttatgaaaaat
ccagaacatgttcaaattaaaaataaagaattaacaaacgttaacgttgaacagttttat
gttcgtgttaaagaacaagaaaaatttgataccatgacgcgcttgatggacgttgatcag
ccagaactttcaattgtttttggtcgtacaaagcgtcgcgttgatgaaatcacacgtggt
ttgaaattgcgtggtttccgggcagaaggtattcatggggaccttgatcagaataaacgt
ttacgtgttattcgcgatttcaaaggcgaccaaattgatatcttagttgccactgacgtt
gctgcgcgtggtcttgatatttcaggtgtaacacatgtctataactatgacattacacaa
gaccctgaaagctatgttcaccgaattggacgtactggtcgtgcgggtaaaactggtgag
tcaattacattcgtttcaccaaatgagatgggttacttatccatgattgagaacctaacc
aagaaacaaatgaaaccattaaaacctgcaactgctgaggaagccttccaagctaagaaa
aaagttgctttgaaaaaaattgaacgtgattttgcggatgaagctattcgttcaaatttt
gataaattcaaggcggacgctttaaaattagcttctgaatttacgccagaagaattagcc
ttatatatcttgagcttaactgtccaagacccggctgatttacctgaagttgaaattgct
cgtgagaaaccattgccgtttaaatatgtcggtggtggccatggtggtggtaaaaagggt
aataaaggcggacgtggtagagataatcgtggacgtggtggtcgtgacaacgatcgtcgc
ggtggtggttatcgaggtaagcgtgatgataaacgtgaagggcgttacagagataaacgt
gacgacaacggcggtaaccgtgattttaaacgcaaaccaaaacgtaatgccaatgacttt
ttcaacaaagagaaaaagtcatcacaaaaggactctggatttgtcatcagacacaaaggg
gaataa

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