Subtercola endophyticus: LQ955_00440
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Entry
LQ955_00440 CDS
T08409
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
suba
Subtercola endophyticus
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
suba03032
]
LQ955_00440
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_00440
Enzymes [BR:
suba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LQ955_00440
DNA replication proteins [BR:
suba03032
]
Prokaryotic type
DNA Topoisomerases
LQ955_00440
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LQ955_00440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UFS59306
LinkDB
All DBs
Position
97084..98097
Genome browser
AA seq
337 aa
AA seq
DB search
MVRLRRSNVAGKGYRRVRAGTGFTYKDLNGDVLRDDELRARIQHLAIPPAWSDVWIAPYA
NGHIQATGIDAAGRRQYIYHPTWREQKDRIKFDRALMLAEALPTARGKVTRDLRHEHPDR
ERASAAAFRMLDQGSLRVGSERYAEQHGSFGLSTLLCAHVNVSGDDVHLKFPAKSGQPWE
SDIRDAELAQVIAGLKRRGPNAHLLAFHTETHPHTTAEHPKPATRAVWHPLDATEINAYV
REQTGGDFTAKDFRTLHGTIAAAVSLAKAGPQTSEYKRKRAIAQSMRDAAAVLSNTPTIA
RTSYVDPRIVDKYTEGITIDPSRLASAETELRNLLYE
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggctcaggcgcagcaacgttgccggcaaggggtaccgacgggttcgggccgga
acggggttcacgtacaaagacctgaacggcgacgtgctcagagacgacgaactgcgggcg
cgcatccagcacctggccataccgcccgcctggagcgacgtgtggatcgccccgtacgcg
aacggccacattcaggccacgggtatcgacgccgcgggccggcgccagtacatctaccac
ccgacctggcgcgaacagaaagaccgcatcaagttcgaccgcgcgctgatgctggccgaa
gcgctgccgacggcacgcggaaaggtcacgcgagacttgcggcacgagcatcccgaccgt
gagcgggcgtcggcggcggcattccggatgctcgatcagggctctctgcgggtcggaagc
gagcggtacgcagaacagcacggcagcttcggcctctccacgctgctctgcgcacacgtg
aacgtcagcggggacgacgtgcacctgaagttccctgccaagagcgggcagccctgggag
tcggacatccgcgacgccgaactcgcccaggtcattgcggggctcaagcggcgagggccg
aacgcgcacctgctcgcgttccataccgagacgcacccgcacacgacagccgagcatccg
aagcccgcaacacgagccgtctggcacccgctcgacgcgaccgagatcaacgcctacgtg
cgcgagcagaccgggggagacttcaccgcgaaagactttcgcaccctgcacggcaccatc
gcggcggccgtgagcctggccaaggccgggccgcagacctcggagtacaaacgcaagcgc
gccatcgcgcagagcatgcgcgatgccgcagccgtgctcagcaacacccccaccatcgcc
cgcaccagttacgtcgacccgcgcatcgtcgacaagtacaccgaaggcatcactatcgac
ccctcccgcctcgcctcagccgaaaccgagctgcgaaacctgctctacgagtag
DBGET
integrated database retrieval system
