Subtercola endophyticus: LQ955_02525
Help
Entry
LQ955_02525 CDS
T08409
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
suba
Subtercola endophyticus
Pathway
suba03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
suba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LQ955_02525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suba03400
]
LQ955_02525
Enzymes [BR:
suba01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LQ955_02525
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LQ955_02525
DNA repair and recombination proteins [BR:
suba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LQ955_02525
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
UFS59695
LinkDB
All DBs
Position
complement(481075..481995)
Genome browser
AA seq
306 aa
AA seq
DB search
MPELPEVYALVADLGARLVGRTLERFDVVSFAALKTFDPPTSALAGRMIVGVTRHGKFLD
LTFTPHADSSPGEELHLVMHLARAGWIRWREGPPVVKPGRGGRPGAGSGPLAARLVLDES
GDPPGSGLDITEAGTKKSLAIYVVRDPNDVPGIARLGPNPLDPTFTLDQFAGILRAAGRA
QIKGVLRNQSVIAGIGNAYSDEILHTAKMSPFKPAAMADDEVERLYDAMLVTLRGAIERS
DGLAASELKREKKLGLQVHGRTGEACPVCGDTVRQVTYADSSLQYCPTCQTGGKPLADRV
LSRLLK
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagttaccagaggtgtacgcgctcgtcgccgacctcggcgcgcgcctcgtgggg
cgcacgctcgagcgcttcgacgtggtgtcgttcgccgcgctcaagaccttcgacccgccg
acgtcggcgctggccgggcggatgatcgtgggggtcacgaggcacggcaagtttctcgat
ctgacgttcactccgcacgcagactcgagccccggcgaagagctgcacctcgtgatgcac
ctggcccgcgcgggctggatccggtggcgcgaaggcccacccgttgtcaagccgggccgc
ggcgggcgcccgggcgctggaagcgggccgctggcggcgcggctcgtgctcgacgagagc
ggtgatccgcccggatcggggctcgacatcaccgaggccggcaccaagaaaagcctcgcg
atctacgtggtgcgcgacccgaacgacgtgcccggaatcgcccgtctcgggccaaacccg
ctcgaccccacgttcacgctcgaccagttcgcgggcatcctgcgggccgccggccgcgcc
cagatcaagggcgtgttgcgcaaccagtcggtgatcgccggcatcggcaacgcctactcc
gacgagatcttgcacaccgcaaagatgtcacccttcaagccggccgcgatggccgacgac
gaggtcgagcggttgtacgacgccatgctggtgaccctgcgcggcgcgatcgaacgatcc
gacggcctcgcggcctccgagttgaagcgcgagaagaagctcggcctgcaggtgcacggc
cgcaccggcgaggcctgccccgtgtgcggtgacacggtgcggcaggtgacgtacgccgac
tcgtcgctgcagtactgccccacctgccagaccggcggcaagccgctggccgaccgggtg
ctgtcgcggttgctcaagtaa
DBGET
integrated database retrieval system
